Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS02880

Experiment: CPG

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS02870 and RALBFv3_RS02875 are separated by 257 nucleotidesRALBFv3_RS02875 and RALBFv3_RS02880 are separated by 25 nucleotidesRALBFv3_RS02880 and RALBFv3_RS02885 are separated by 87 nucleotides RALBFv3_RS02870: RALBFv3_RS02870 - urea ABC transporter substrate-binding protein, at 634,126 to 635,382 _RS02870 RALBFv3_RS02875: RALBFv3_RS02875 - MaoC family dehydratase, at 635,640 to 636,128 _RS02875 RALBFv3_RS02880: RALBFv3_RS02880 - MaoC family dehydratase, at 636,154 to 636,624 _RS02880 RALBFv3_RS02885: RALBFv3_RS02885 - acyl-CoA dehydrogenase, at 636,712 to 637,851 _RS02885 Position (kb) 636 637Strain fitness (log2 ratio) -1 0 1at 635.440 kb on + strandat 635.441 kb on - strandat 635.860 kb on + strand, within RALBFv3_RS02875at 636.548 kb on + strand, within RALBFv3_RS02880at 636.548 kb on + strand, within RALBFv3_RS02880at 636.921 kb on - strand, within RALBFv3_RS02885at 636.971 kb on + strand, within RALBFv3_RS02885at 636.972 kb on - strand, within RALBFv3_RS02885at 637.079 kb on + strand, within RALBFv3_RS02885at 637.080 kb on - strand, within RALBFv3_RS02885at 637.469 kb on + strand, within RALBFv3_RS02885

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction CPG
remove
635,440 + +1.3
635,441 - +0.4
635,860 + RALBFv3_RS02875 0.45 -0.2
636,548 + RALBFv3_RS02880 0.84 +0.6
636,548 + RALBFv3_RS02880 0.84 +0.3
636,921 - RALBFv3_RS02885 0.18 +0.0
636,971 + RALBFv3_RS02885 0.23 +0.9
636,972 - RALBFv3_RS02885 0.23 -1.3
637,079 + RALBFv3_RS02885 0.32 -0.3
637,080 - RALBFv3_RS02885 0.32 +0.2
637,469 + RALBFv3_RS02885 0.66 +0.3

Or see this region's nucleotide sequence