Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS02545

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS02540 and RALBFv3_RS02545 are separated by 23 nucleotidesRALBFv3_RS02545 and RALBFv3_RS02550 are separated by 123 nucleotides RALBFv3_RS02540: RALBFv3_RS02540 - nodulation factor ABC transporter ATP-binding protein NodI, at 565,410 to 566,375 _RS02540 RALBFv3_RS02545: RALBFv3_RS02545 - nodulation protein NodJ, at 566,399 to 567,220 _RS02545 RALBFv3_RS02550: RALBFv3_RS02550 - amidophosphoribosyltransferase, at 567,344 to 568,879 _RS02550 Position (kb) 566 567 568Strain fitness (log2 ratio) -1 0 1at 566.483 kb on + strand, within RALBFv3_RS02545at 566.564 kb on + strand, within RALBFv3_RS02545at 566.564 kb on + strand, within RALBFv3_RS02545at 566.624 kb on + strand, within RALBFv3_RS02545at 566.693 kb on + strand, within RALBFv3_RS02545at 566.694 kb on - strand, within RALBFv3_RS02545at 566.745 kb on - strand, within RALBFv3_RS02545at 567.161 kb on + strandat 567.162 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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566,483 + RALBFv3_RS02545 0.10 +1.1
566,564 + RALBFv3_RS02545 0.20 +1.2
566,564 + RALBFv3_RS02545 0.20 -0.5
566,624 + RALBFv3_RS02545 0.27 -0.6
566,693 + RALBFv3_RS02545 0.36 -0.1
566,694 - RALBFv3_RS02545 0.36 +0.6
566,745 - RALBFv3_RS02545 0.42 +0.0
567,161 + -0.7
567,162 - -0.2

Or see this region's nucleotide sequence