Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS02340

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS02335 and RALBFv3_RS02340 are separated by 152 nucleotidesRALBFv3_RS02340 and RALBFv3_RS02345 overlap by 4 nucleotides RALBFv3_RS02335: RALBFv3_RS02335 - amino acid transporter, at 519,488 to 520,639 _RS02335 RALBFv3_RS02340: RALBFv3_RS02340 - LysR family transcriptional regulator, at 520,792 to 521,766 _RS02340 RALBFv3_RS02345: RALBFv3_RS02345 - NAD(P)/FAD-dependent oxidoreductase, at 521,763 to 523,283 _RS02345 Position (kb) 520 521 522Strain fitness (log2 ratio) -1 0 1at 520.421 kb on + strand, within RALBFv3_RS02335at 520.440 kb on - strand, within RALBFv3_RS02335at 520.679 kb on - strandat 520.789 kb on + strandat 520.790 kb on - strandat 521.490 kb on - strand, within RALBFv3_RS02340at 521.720 kb on + strandat 522.657 kb on + strand, within RALBFv3_RS02345at 522.658 kb on - strand, within RALBFv3_RS02345

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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520,421 + RALBFv3_RS02335 0.81 -0.5
520,440 - RALBFv3_RS02335 0.83 +1.1
520,679 - +1.4
520,789 + +0.2
520,790 - -0.3
521,490 - RALBFv3_RS02340 0.72 +0.6
521,720 + +0.1
522,657 + RALBFv3_RS02345 0.59 +0.5
522,658 - RALBFv3_RS02345 0.59 +1.4

Or see this region's nucleotide sequence