Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS02130

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS02120 and RALBFv3_RS02125 are separated by 85 nucleotidesRALBFv3_RS02125 and RALBFv3_RS02130 are separated by 23 nucleotidesRALBFv3_RS02130 and RALBFv3_RS02135 are separated by 30 nucleotidesRALBFv3_RS02135 and RALBFv3_RS02140 are separated by 2 nucleotides RALBFv3_RS02120: RALBFv3_RS02120 - phosphate regulon sensor histidine kinase PhoR, at 473,911 to 475,242 _RS02120 RALBFv3_RS02125: RALBFv3_RS02125 - phosphate regulon transcriptional regulatory protein PhoB, at 475,328 to 476,041 _RS02125 RALBFv3_RS02130: RALBFv3_RS02130 - phosphate transport system regulatory protein PhoU, at 476,065 to 476,772 _RS02130 RALBFv3_RS02135: RALBFv3_RS02135 - phosphate ABC transporter ATP-binding protein PstB, at 476,803 to 477,588 _RS02135 RALBFv3_RS02140: RALBFv3_RS02140 - phosphate transporter permease subunit PtsA, at 477,591 to 478,475 _RS02140 Position (kb) 476 477Strain fitness (log2 ratio) -2 -1 0 1at 475.106 kb on + strand, within RALBFv3_RS02120at 475.107 kb on - strand, within RALBFv3_RS02120at 475.738 kb on - strand, within RALBFv3_RS02125at 475.738 kb on - strand, within RALBFv3_RS02125at 475.944 kb on + strand, within RALBFv3_RS02125at 476.136 kb on - strand, within RALBFv3_RS02130at 476.246 kb on + strand, within RALBFv3_RS02130at 476.247 kb on - strand, within RALBFv3_RS02130at 476.406 kb on - strand, within RALBFv3_RS02130at 476.825 kb on + strandat 476.900 kb on + strand, within RALBFv3_RS02135at 476.901 kb on - strand, within RALBFv3_RS02135at 476.906 kb on + strand, within RALBFv3_RS02135at 476.915 kb on + strand, within RALBFv3_RS02135at 476.969 kb on + strand, within RALBFv3_RS02135at 477.254 kb on + strand, within RALBFv3_RS02135at 477.398 kb on + strand, within RALBFv3_RS02135at 477.398 kb on + strand, within RALBFv3_RS02135at 477.398 kb on + strand, within RALBFv3_RS02135at 477.399 kb on - strand, within RALBFv3_RS02135at 477.518 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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475,106 + RALBFv3_RS02120 0.90 -1.0
475,107 - RALBFv3_RS02120 0.90 -0.5
475,738 - RALBFv3_RS02125 0.57 -0.8
475,738 - RALBFv3_RS02125 0.57 +0.0
475,944 + RALBFv3_RS02125 0.86 -0.9
476,136 - RALBFv3_RS02130 0.10 +1.1
476,246 + RALBFv3_RS02130 0.26 -0.7
476,247 - RALBFv3_RS02130 0.26 +1.1
476,406 - RALBFv3_RS02130 0.48 +0.3
476,825 + -1.0
476,900 + RALBFv3_RS02135 0.12 -1.4
476,901 - RALBFv3_RS02135 0.12 -2.0
476,906 + RALBFv3_RS02135 0.13 -0.4
476,915 + RALBFv3_RS02135 0.14 -0.6
476,969 + RALBFv3_RS02135 0.21 -1.0
477,254 + RALBFv3_RS02135 0.57 -0.2
477,398 + RALBFv3_RS02135 0.76 +0.0
477,398 + RALBFv3_RS02135 0.76 +1.0
477,398 + RALBFv3_RS02135 0.76 -0.7
477,399 - RALBFv3_RS02135 0.76 -2.2
477,518 + -0.5

Or see this region's nucleotide sequence