Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02095 and RALBFv3_RS02100 are separated by 139 nucleotides RALBFv3_RS02100 and RALBFv3_RS02105 are separated by 153 nucleotides RALBFv3_RS02105 and RALBFv3_RS02110 are separated by 76 nucleotides
RALBFv3_RS02095: RALBFv3_RS02095 - tRNA-Pro, at 468,201 to 468,277
_RS02095
RALBFv3_RS02100: RALBFv3_RS02100 - phosphohistidine phosphatase SixA, at 468,417 to 468,890
_RS02100
RALBFv3_RS02105: RALBFv3_RS02105 - GNAT family N-acetyltransferase, at 469,044 to 469,880
_RS02105
RALBFv3_RS02110: RALBFv3_RS02110 - exopolyphosphatase, at 469,957 to 471,495
_RS02110
Position (kb) 469
470 Strain fitness (log2 ratio) -1
0
1 at 468.160 kb on - strand at 468.173 kb on + strand at 468.291 kb on - strand at 469.228 kb on - strand, within RALBFv3_RS02105 at 469.404 kb on + strand, within RALBFv3_RS02105 at 469.665 kb on + strand, within RALBFv3_RS02105 at 469.666 kb on - strand, within RALBFv3_RS02105 at 469.964 kb on + strand at 469.965 kb on - strand at 470.330 kb on + strand, within RALBFv3_RS02110
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 468,160 - -0.0 468,173 + -0.2 468,291 - -1.0 469,228 - RALBFv3_RS02105 0.22 +0.4 469,404 + RALBFv3_RS02105 0.43 +0.3 469,665 + RALBFv3_RS02105 0.74 +1.0 469,666 - RALBFv3_RS02105 0.74 +0.1 469,964 + +0.0 469,965 - +0.7 470,330 + RALBFv3_RS02110 0.24 -0.3
Or see this region's nucleotide sequence