Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02015 and RALBFv3_RS02020 are separated by 120 nucleotides RALBFv3_RS02020 and RALBFv3_RS02025 are separated by 46 nucleotides RALBFv3_RS02025 and RALBFv3_RS02030 are separated by 109 nucleotides
RALBFv3_RS02015: RALBFv3_RS02015 - Crp/Fnr family transcriptional regulator, at 454,021 to 454,821
_RS02015
RALBFv3_RS02020: RALBFv3_RS02020 - conjugal transfer protein TraR, at 454,942 to 455,298
_RS02020
RALBFv3_RS02025: RALBFv3_RS02025 - hypothetical protein, at 455,345 to 455,875
_RS02025
RALBFv3_RS02030: RALBFv3_RS02030 - universal stress protein, at 455,985 to 456,485
_RS02030
Position (kb) 454
455
456 Strain fitness (log2 ratio) -1
0
1 at 454.297 kb on + strand, within RALBFv3_RS02015 at 454.298 kb on - strand, within RALBFv3_RS02015 at 454.419 kb on + strand, within RALBFv3_RS02015 at 454.454 kb on + strand, within RALBFv3_RS02015 at 454.455 kb on - strand, within RALBFv3_RS02015 at 454.700 kb on - strand, within RALBFv3_RS02015 at 454.787 kb on - strand at 454.819 kb on + strand at 454.820 kb on - strand at 454.820 kb on - strand at 454.937 kb on + strand at 454.937 kb on + strand at 454.938 kb on - strand at 454.938 kb on - strand at 454.957 kb on + strand at 454.957 kb on + strand at 454.957 kb on + strand at 455.048 kb on + strand, within RALBFv3_RS02020 at 455.131 kb on - strand, within RALBFv3_RS02020 at 455.131 kb on - strand, within RALBFv3_RS02020 at 455.692 kb on - strand, within RALBFv3_RS02025 at 455.851 kb on - strand at 455.853 kb on + strand at 455.853 kb on + strand at 455.854 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 454,297 + RALBFv3_RS02015 0.34 -0.0 454,298 - RALBFv3_RS02015 0.35 -0.8 454,419 + RALBFv3_RS02015 0.50 +0.6 454,454 + RALBFv3_RS02015 0.54 -0.5 454,455 - RALBFv3_RS02015 0.54 -0.1 454,700 - RALBFv3_RS02015 0.85 -0.3 454,787 - +0.0 454,819 + -0.4 454,820 - -0.3 454,820 - +0.4 454,937 + +0.3 454,937 + +0.4 454,938 - +0.3 454,938 - -0.1 454,957 + -0.8 454,957 + -0.2 454,957 + +0.2 455,048 + RALBFv3_RS02020 0.30 +0.6 455,131 - RALBFv3_RS02020 0.53 +0.0 455,131 - RALBFv3_RS02020 0.53 +1.3 455,692 - RALBFv3_RS02025 0.65 -0.1 455,851 - -0.2 455,853 + -0.3 455,853 + +0.3 455,854 - -1.0
Or see this region's nucleotide sequence