Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS01805 and RALBFv3_RS01810 are separated by 26 nucleotides RALBFv3_RS01810 and RALBFv3_RS01815 are separated by 25 nucleotides
RALBFv3_RS01805: RALBFv3_RS01805 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 402,971 to 405,211
_RS01805
RALBFv3_RS01810: RALBFv3_RS01810 - RidA family protein, at 405,238 to 405,606
_RS01810
RALBFv3_RS01815: RALBFv3_RS01815 - alpha/beta hydrolase, at 405,632 to 406,501
_RS01815
Position (kb) 405
406 Strain fitness (log2 ratio) -1
0
1
2 at 404.247 kb on + strand, within RALBFv3_RS01805 at 404.247 kb on + strand, within RALBFv3_RS01805 at 404.248 kb on - strand, within RALBFv3_RS01805 at 404.248 kb on - strand, within RALBFv3_RS01805 at 404.274 kb on + strand, within RALBFv3_RS01805 at 404.433 kb on + strand, within RALBFv3_RS01805 at 404.433 kb on + strand, within RALBFv3_RS01805 at 404.434 kb on - strand, within RALBFv3_RS01805 at 404.434 kb on - strand, within RALBFv3_RS01805 at 404.434 kb on - strand, within RALBFv3_RS01805 at 404.434 kb on - strand, within RALBFv3_RS01805 at 404.434 kb on - strand, within RALBFv3_RS01805 at 404.434 kb on - strand, within RALBFv3_RS01805 at 404.571 kb on + strand, within RALBFv3_RS01805 at 404.571 kb on + strand, within RALBFv3_RS01805 at 404.572 kb on - strand, within RALBFv3_RS01805 at 404.658 kb on + strand, within RALBFv3_RS01805 at 404.659 kb on - strand, within RALBFv3_RS01805 at 404.659 kb on - strand, within RALBFv3_RS01805 at 405.053 kb on - strand at 405.533 kb on + strand, within RALBFv3_RS01810 at 405.534 kb on - strand, within RALBFv3_RS01810 at 405.584 kb on + strand at 405.585 kb on - strand at 405.906 kb on + strand, within RALBFv3_RS01815 at 405.906 kb on + strand, within RALBFv3_RS01815 at 405.906 kb on + strand, within RALBFv3_RS01815 at 405.907 kb on - strand, within RALBFv3_RS01815 at 406.059 kb on + strand, within RALBFv3_RS01815 at 406.060 kb on - strand, within RALBFv3_RS01815 at 406.060 kb on - strand, within RALBFv3_RS01815 at 406.060 kb on - strand, within RALBFv3_RS01815 at 406.245 kb on + strand, within RALBFv3_RS01815 at 406.245 kb on + strand, within RALBFv3_RS01815 at 406.245 kb on + strand, within RALBFv3_RS01815 at 406.246 kb on - strand, within RALBFv3_RS01815 at 406.512 kb on + strand at 406.512 kb on + strand at 406.512 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 404,247 + RALBFv3_RS01805 0.57 -0.5 404,247 + RALBFv3_RS01805 0.57 -0.6 404,248 - RALBFv3_RS01805 0.57 +0.2 404,248 - RALBFv3_RS01805 0.57 +0.5 404,274 + RALBFv3_RS01805 0.58 +1.1 404,433 + RALBFv3_RS01805 0.65 -0.0 404,433 + RALBFv3_RS01805 0.65 -0.8 404,434 - RALBFv3_RS01805 0.65 +0.3 404,434 - RALBFv3_RS01805 0.65 -0.4 404,434 - RALBFv3_RS01805 0.65 +2.0 404,434 - RALBFv3_RS01805 0.65 +0.7 404,434 - RALBFv3_RS01805 0.65 +0.1 404,434 - RALBFv3_RS01805 0.65 +0.3 404,571 + RALBFv3_RS01805 0.71 +0.4 404,571 + RALBFv3_RS01805 0.71 -0.0 404,572 - RALBFv3_RS01805 0.71 +1.1 404,658 + RALBFv3_RS01805 0.75 +0.4 404,659 - RALBFv3_RS01805 0.75 -1.0 404,659 - RALBFv3_RS01805 0.75 +0.3 405,053 - -0.2 405,533 + RALBFv3_RS01810 0.80 +0.8 405,534 - RALBFv3_RS01810 0.80 -0.0 405,584 + +0.2 405,585 - +0.4 405,906 + RALBFv3_RS01815 0.31 +0.8 405,906 + RALBFv3_RS01815 0.31 -0.2 405,906 + RALBFv3_RS01815 0.31 +1.0 405,907 - RALBFv3_RS01815 0.32 -0.3 406,059 + RALBFv3_RS01815 0.49 -0.5 406,060 - RALBFv3_RS01815 0.49 +0.6 406,060 - RALBFv3_RS01815 0.49 -0.4 406,060 - RALBFv3_RS01815 0.49 +0.4 406,245 + RALBFv3_RS01815 0.70 +0.1 406,245 + RALBFv3_RS01815 0.70 -0.2 406,245 + RALBFv3_RS01815 0.70 -0.4 406,246 - RALBFv3_RS01815 0.71 +1.2 406,512 + +0.6 406,512 + +0.4 406,512 + +0.3
Or see this region's nucleotide sequence