Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS01740 and RALBFv3_RS01745 overlap by 9 nucleotides RALBFv3_RS01745 and RALBFv3_RS01750 are separated by 116 nucleotides
RALBFv3_RS01740: RALBFv3_RS01740 - aldose epimerase, at 391,973 to 392,926
_RS01740
RALBFv3_RS01745: RALBFv3_RS01745 - carboxymuconolactone decarboxylase family protein, at 392,918 to 393,277
_RS01745
RALBFv3_RS01750: RALBFv3_RS01750 - AraC family transcriptional regulator, at 393,394 to 394,314
_RS01750
Position (kb) 392
393
394 Strain fitness (log2 ratio) -2
-1
0
1 at 391.930 kb on + strand at 391.930 kb on + strand at 391.930 kb on + strand at 391.946 kb on + strand at 392.008 kb on + strand at 392.008 kb on + strand at 392.009 kb on - strand at 392.010 kb on - strand at 392.110 kb on + strand, within RALBFv3_RS01740 at 392.111 kb on - strand, within RALBFv3_RS01740 at 392.361 kb on - strand, within RALBFv3_RS01740 at 392.452 kb on + strand, within RALBFv3_RS01740 at 392.493 kb on - strand, within RALBFv3_RS01740 at 392.527 kb on + strand, within RALBFv3_RS01740 at 392.528 kb on - strand, within RALBFv3_RS01740 at 392.585 kb on - strand, within RALBFv3_RS01740 at 392.603 kb on - strand, within RALBFv3_RS01740 at 392.611 kb on + strand, within RALBFv3_RS01740 at 392.795 kb on + strand, within RALBFv3_RS01740 at 392.795 kb on + strand, within RALBFv3_RS01740 at 392.796 kb on - strand, within RALBFv3_RS01740 at 392.899 kb on + strand at 392.899 kb on + strand at 392.982 kb on + strand, within RALBFv3_RS01745 at 393.088 kb on + strand, within RALBFv3_RS01745 at 393.292 kb on - strand at 393.331 kb on + strand at 393.331 kb on + strand at 394.096 kb on + strand, within RALBFv3_RS01750 at 394.189 kb on - strand, within RALBFv3_RS01750
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 391,930 + -0.7 391,930 + +0.4 391,930 + -0.0 391,946 + +0.5 392,008 + -0.4 392,008 + +0.1 392,009 - +0.7 392,010 - -0.6 392,110 + RALBFv3_RS01740 0.14 -1.5 392,111 - RALBFv3_RS01740 0.14 +0.0 392,361 - RALBFv3_RS01740 0.41 +0.6 392,452 + RALBFv3_RS01740 0.50 -2.0 392,493 - RALBFv3_RS01740 0.55 -0.0 392,527 + RALBFv3_RS01740 0.58 -0.6 392,528 - RALBFv3_RS01740 0.58 -0.0 392,585 - RALBFv3_RS01740 0.64 +0.1 392,603 - RALBFv3_RS01740 0.66 -0.3 392,611 + RALBFv3_RS01740 0.67 +0.3 392,795 + RALBFv3_RS01740 0.86 -0.5 392,795 + RALBFv3_RS01740 0.86 -0.3 392,796 - RALBFv3_RS01740 0.86 -0.5 392,899 + +0.2 392,899 + +0.7 392,982 + RALBFv3_RS01745 0.18 -0.0 393,088 + RALBFv3_RS01745 0.47 +0.6 393,292 - +0.6 393,331 + +0.2 393,331 + -2.0 394,096 + RALBFv3_RS01750 0.76 -0.1 394,189 - RALBFv3_RS01750 0.86 -0.4
Or see this region's nucleotide sequence