Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS01505 and RALBFv3_RS01510 are separated by 296 nucleotides RALBFv3_RS01510 and RALBFv3_RS01515 are separated by 36 nucleotides RALBFv3_RS01515 and RALBFv3_RS01520 overlap by 17 nucleotides
RALBFv3_RS01505: RALBFv3_RS01505 - class I poly(R)-hydroxyalkanoic acid synthase, at 339,018 to 340,814
_RS01505
RALBFv3_RS01510: RALBFv3_RS01510 - hypothetical protein, at 341,111 to 341,329
_RS01510
RALBFv3_RS01515: RALBFv3_RS01515 - peptidoglycan editing factor PgeF, at 341,366 to 342,172
_RS01515
RALBFv3_RS01520: RALBFv3_RS01520 - RluA family pseudouridine synthase, at 342,156 to 343,268
_RS01520
Position (kb) 341
342 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 340.123 kb on + strand, within RALBFv3_RS01505 at 340.123 kb on + strand, within RALBFv3_RS01505 at 340.124 kb on - strand, within RALBFv3_RS01505 at 340.124 kb on - strand, within RALBFv3_RS01505 at 340.124 kb on - strand, within RALBFv3_RS01505 at 340.429 kb on + strand, within RALBFv3_RS01505 at 340.429 kb on + strand, within RALBFv3_RS01505 at 340.429 kb on + strand, within RALBFv3_RS01505 at 340.430 kb on - strand, within RALBFv3_RS01505 at 340.430 kb on - strand, within RALBFv3_RS01505 at 340.814 kb on + strand at 340.865 kb on - strand at 340.865 kb on - strand at 340.865 kb on - strand at 340.866 kb on - strand at 340.884 kb on + strand at 341.008 kb on + strand at 341.026 kb on - strand at 341.026 kb on - strand at 341.114 kb on + strand at 341.114 kb on + strand at 341.114 kb on + strand at 341.115 kb on - strand at 341.115 kb on - strand at 341.139 kb on - strand, within RALBFv3_RS01510 at 341.427 kb on + strand at 341.427 kb on + strand at 341.427 kb on + strand at 341.427 kb on + strand at 341.428 kb on - strand at 341.428 kb on - strand at 341.470 kb on - strand, within RALBFv3_RS01515 at 341.518 kb on - strand, within RALBFv3_RS01515 at 341.850 kb on - strand, within RALBFv3_RS01515 at 342.072 kb on + strand, within RALBFv3_RS01515
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 340,123 + RALBFv3_RS01505 0.61 -2.2 340,123 + RALBFv3_RS01505 0.61 -1.6 340,124 - RALBFv3_RS01505 0.62 -2.0 340,124 - RALBFv3_RS01505 0.62 -2.0 340,124 - RALBFv3_RS01505 0.62 -0.0 340,429 + RALBFv3_RS01505 0.79 -1.8 340,429 + RALBFv3_RS01505 0.79 -2.5 340,429 + RALBFv3_RS01505 0.79 -3.2 340,430 - RALBFv3_RS01505 0.79 +1.0 340,430 - RALBFv3_RS01505 0.79 -0.6 340,814 + -2.5 340,865 - -0.7 340,865 - -0.8 340,865 - -0.0 340,866 - -0.6 340,884 + -1.0 341,008 + +1.5 341,026 - -0.0 341,026 - -0.1 341,114 + -1.0 341,114 + -0.0 341,114 + -0.3 341,115 - +1.0 341,115 - +1.6 341,139 - RALBFv3_RS01510 0.13 +0.8 341,427 + +1.2 341,427 + -1.6 341,427 + -0.6 341,427 + -0.2 341,428 - -0.6 341,428 - -0.0 341,470 - RALBFv3_RS01515 0.13 -0.5 341,518 - RALBFv3_RS01515 0.19 -0.1 341,850 - RALBFv3_RS01515 0.60 -0.3 342,072 + RALBFv3_RS01515 0.87 -1.2
Or see this region's nucleotide sequence