Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS01110

Experiment: CPG

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS01100 and RALBFv3_RS01105 are separated by 181 nucleotidesRALBFv3_RS01105 and RALBFv3_RS01110 are separated by 32 nucleotidesRALBFv3_RS01110 and RALBFv3_RS01115 are separated by 48 nucleotides RALBFv3_RS01100: RALBFv3_RS01100 - 6-aminohexanoate-dimer hydrolase, at 242,171 to 243,493 _RS01100 RALBFv3_RS01105: RALBFv3_RS01105 - PaaI family thioesterase, at 243,675 to 244,109 _RS01105 RALBFv3_RS01110: RALBFv3_RS01110 - gluconate 2-dehydrogenase, at 244,142 to 244,924 _RS01110 RALBFv3_RS01115: RALBFv3_RS01115 - acyl-CoA dehydrogenase, at 244,973 to 246,841 _RS01115 Position (kb) 244 245Strain fitness (log2 ratio) -1 0 1at 244.365 kb on + strand, within RALBFv3_RS01110at 244.366 kb on - strand, within RALBFv3_RS01110at 244.429 kb on - strand, within RALBFv3_RS01110at 245.496 kb on + strand, within RALBFv3_RS01115at 245.496 kb on + strand, within RALBFv3_RS01115at 245.850 kb on + strand, within RALBFv3_RS01115

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction CPG
remove
244,365 + RALBFv3_RS01110 0.28 +0.5
244,366 - RALBFv3_RS01110 0.29 -0.9
244,429 - RALBFv3_RS01110 0.37 +0.7
245,496 + RALBFv3_RS01115 0.28 -0.6
245,496 + RALBFv3_RS01115 0.28 -0.1
245,850 + RALBFv3_RS01115 0.47 -0.1

Or see this region's nucleotide sequence