Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS01085 and RALBFv3_RS01090 are separated by 33 nucleotides RALBFv3_RS01090 and RALBFv3_RS01095 are separated by 99 nucleotides
RALBFv3_RS01085: RALBFv3_RS01085 - glutathione S-transferase family protein, at 239,189 to 240,151
_RS01085
RALBFv3_RS01090: RALBFv3_RS01090 - class II aldolase/adducin family protein, at 240,185 to 241,033
_RS01090
RALBFv3_RS01095: RALBFv3_RS01095 - NADP-dependent oxidoreductase, at 241,133 to 242,143
_RS01095
Position (kb) 240
241
242 Strain fitness (log2 ratio) -1
0
1 at 239.335 kb on - strand, within RALBFv3_RS01085 at 239.589 kb on + strand, within RALBFv3_RS01085 at 239.964 kb on + strand, within RALBFv3_RS01085 at 240.526 kb on - strand, within RALBFv3_RS01090 at 240.526 kb on - strand, within RALBFv3_RS01090 at 240.610 kb on - strand, within RALBFv3_RS01090 at 240.826 kb on + strand, within RALBFv3_RS01090 at 240.955 kb on - strand at 241.134 kb on + strand at 241.134 kb on + strand at 241.476 kb on + strand, within RALBFv3_RS01095 at 241.518 kb on + strand, within RALBFv3_RS01095 at 241.587 kb on + strand, within RALBFv3_RS01095 at 241.737 kb on + strand, within RALBFv3_RS01095 at 241.738 kb on - strand, within RALBFv3_RS01095 at 241.884 kb on + strand, within RALBFv3_RS01095 at 241.995 kb on + strand, within RALBFv3_RS01095 at 241.995 kb on + strand, within RALBFv3_RS01095
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 239,335 - RALBFv3_RS01085 0.15 +1.0 239,589 + RALBFv3_RS01085 0.42 +0.4 239,964 + RALBFv3_RS01085 0.80 -1.6 240,526 - RALBFv3_RS01090 0.40 +0.9 240,526 - RALBFv3_RS01090 0.40 +0.3 240,610 - RALBFv3_RS01090 0.50 -0.5 240,826 + RALBFv3_RS01090 0.76 +1.2 240,955 - -0.5 241,134 + -0.1 241,134 + +0.2 241,476 + RALBFv3_RS01095 0.34 -0.2 241,518 + RALBFv3_RS01095 0.38 -0.3 241,587 + RALBFv3_RS01095 0.45 -0.4 241,737 + RALBFv3_RS01095 0.60 +0.1 241,738 - RALBFv3_RS01095 0.60 +0.3 241,884 + RALBFv3_RS01095 0.74 +1.0 241,995 + RALBFv3_RS01095 0.85 -1.0 241,995 + RALBFv3_RS01095 0.85 +0.4
Or see this region's nucleotide sequence