Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS01070

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS01065 and RALBFv3_RS01070 are separated by 96 nucleotidesRALBFv3_RS01070 and RALBFv3_RS01075 are separated by 33 nucleotides RALBFv3_RS01065: RALBFv3_RS01065 - alpha/beta hydrolase, at 234,961 to 235,929 _RS01065 RALBFv3_RS01070: RALBFv3_RS01070 - 4-hydroxybutyrate dehydrogenase, at 236,026 to 237,174 _RS01070 RALBFv3_RS01075: RALBFv3_RS01075 - alpha/beta hydrolase, at 237,208 to 238,143 _RS01075 Position (kb) 236 237 238Strain fitness (log2 ratio) -1 0 1at 235.076 kb on + strand, within RALBFv3_RS01065at 235.076 kb on + strand, within RALBFv3_RS01065at 235.077 kb on - strand, within RALBFv3_RS01065at 235.077 kb on - strand, within RALBFv3_RS01065at 235.673 kb on + strand, within RALBFv3_RS01065at 235.674 kb on - strand, within RALBFv3_RS01065at 236.372 kb on - strand, within RALBFv3_RS01070at 236.945 kb on - strand, within RALBFv3_RS01070at 237.173 kb on - strandat 237.210 kb on - strandat 237.473 kb on + strand, within RALBFv3_RS01075at 237.474 kb on - strand, within RALBFv3_RS01075at 237.537 kb on - strand, within RALBFv3_RS01075at 237.996 kb on - strand, within RALBFv3_RS01075

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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235,076 + RALBFv3_RS01065 0.12 -0.6
235,076 + RALBFv3_RS01065 0.12 -0.3
235,077 - RALBFv3_RS01065 0.12 +0.9
235,077 - RALBFv3_RS01065 0.12 -0.4
235,673 + RALBFv3_RS01065 0.73 +0.5
235,674 - RALBFv3_RS01065 0.74 -0.3
236,372 - RALBFv3_RS01070 0.30 +0.7
236,945 - RALBFv3_RS01070 0.80 +0.6
237,173 - +0.2
237,210 - +0.0
237,473 + RALBFv3_RS01075 0.28 +1.4
237,474 - RALBFv3_RS01075 0.28 +1.3
237,537 - RALBFv3_RS01075 0.35 +0.7
237,996 - RALBFv3_RS01075 0.84 -0.8

Or see this region's nucleotide sequence