Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS01055 and RALBFv3_RS01060 overlap by 4 nucleotides RALBFv3_RS01060 and RALBFv3_RS01065 are separated by 10 nucleotides RALBFv3_RS01065 and RALBFv3_RS01070 are separated by 96 nucleotides
RALBFv3_RS01055: RALBFv3_RS01055 - GNAT family N-acetyltransferase, at 234,061 to 234,516
_RS01055
RALBFv3_RS01060: RALBFv3_RS01060 - acyl-CoA thioesterase, at 234,513 to 234,950
_RS01060
RALBFv3_RS01065: RALBFv3_RS01065 - alpha/beta hydrolase, at 234,961 to 235,929
_RS01065
RALBFv3_RS01070: RALBFv3_RS01070 - 4-hydroxybutyrate dehydrogenase, at 236,026 to 237,174
_RS01070
Position (kb) 234
235
236 Strain fitness (log2 ratio) -1
0
1 at 234.188 kb on + strand, within RALBFv3_RS01055 at 234.548 kb on + strand at 234.610 kb on + strand, within RALBFv3_RS01060 at 234.611 kb on - strand, within RALBFv3_RS01060 at 234.611 kb on - strand, within RALBFv3_RS01060 at 234.611 kb on - strand, within RALBFv3_RS01060 at 234.611 kb on - strand, within RALBFv3_RS01060 at 234.611 kb on - strand, within RALBFv3_RS01060 at 234.650 kb on - strand, within RALBFv3_RS01060 at 234.650 kb on - strand, within RALBFv3_RS01060 at 234.766 kb on + strand, within RALBFv3_RS01060 at 235.076 kb on + strand, within RALBFv3_RS01065 at 235.076 kb on + strand, within RALBFv3_RS01065 at 235.077 kb on - strand, within RALBFv3_RS01065 at 235.077 kb on - strand, within RALBFv3_RS01065 at 235.673 kb on + strand, within RALBFv3_RS01065 at 235.674 kb on - strand, within RALBFv3_RS01065 at 236.372 kb on - strand, within RALBFv3_RS01070
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 234,188 + RALBFv3_RS01055 0.28 -1.0 234,548 + -0.3 234,610 + RALBFv3_RS01060 0.22 -0.4 234,611 - RALBFv3_RS01060 0.22 -0.8 234,611 - RALBFv3_RS01060 0.22 -0.8 234,611 - RALBFv3_RS01060 0.22 -0.2 234,611 - RALBFv3_RS01060 0.22 -0.3 234,611 - RALBFv3_RS01060 0.22 -0.3 234,650 - RALBFv3_RS01060 0.31 -0.3 234,650 - RALBFv3_RS01060 0.31 +0.5 234,766 + RALBFv3_RS01060 0.58 +0.3 235,076 + RALBFv3_RS01065 0.12 -0.6 235,076 + RALBFv3_RS01065 0.12 -0.3 235,077 - RALBFv3_RS01065 0.12 +0.9 235,077 - RALBFv3_RS01065 0.12 -0.4 235,673 + RALBFv3_RS01065 0.73 +0.5 235,674 - RALBFv3_RS01065 0.74 -0.3 236,372 - RALBFv3_RS01070 0.30 +0.7
Or see this region's nucleotide sequence