Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS00765 and RALBFv3_RS00770 are separated by 67 nucleotides RALBFv3_RS00770 and RALBFv3_RS00775 are separated by 123 nucleotides RALBFv3_RS00775 and RALBFv3_RS00780 are separated by 33 nucleotides
RALBFv3_RS00765: RALBFv3_RS00765 - muconate cycloisomerase, at 174,103 to 175,212
_RS00765
RALBFv3_RS00770: RALBFv3_RS00770 - muconolactone delta-isomerase, at 175,280 to 175,570
_RS00770
RALBFv3_RS00775: RALBFv3_RS00775 - catechol 1,2-dioxygenase, at 175,694 to 176,614
_RS00775
RALBFv3_RS00780: RALBFv3_RS00780 - benzoate 1,2-dioxygenase large subunit, at 176,648 to 178,015
_RS00780
Position (kb) 175
176
177 Strain fitness (log2 ratio) -1
0
1
2 at 175.294 kb on - strand at 175.428 kb on - strand, within RALBFv3_RS00770 at 175.862 kb on + strand, within RALBFv3_RS00775 at 176.175 kb on - strand, within RALBFv3_RS00775 at 176.420 kb on + strand, within RALBFv3_RS00775 at 176.786 kb on + strand, within RALBFv3_RS00780 at 176.786 kb on + strand, within RALBFv3_RS00780 at 176.810 kb on + strand, within RALBFv3_RS00780 at 176.811 kb on - strand, within RALBFv3_RS00780 at 176.985 kb on - strand, within RALBFv3_RS00780 at 176.985 kb on - strand, within RALBFv3_RS00780 at 177.126 kb on - strand, within RALBFv3_RS00780 at 177.263 kb on + strand, within RALBFv3_RS00780 at 177.264 kb on - strand, within RALBFv3_RS00780 at 177.440 kb on + strand, within RALBFv3_RS00780 at 177.441 kb on - strand, within RALBFv3_RS00780 at 177.441 kb on - strand, within RALBFv3_RS00780 at 177.525 kb on - strand, within RALBFv3_RS00780 at 177.525 kb on - strand, within RALBFv3_RS00780 at 177.590 kb on + strand, within RALBFv3_RS00780
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 175,294 - -0.0 175,428 - RALBFv3_RS00770 0.51 -0.5 175,862 + RALBFv3_RS00775 0.18 +1.1 176,175 - RALBFv3_RS00775 0.52 +1.9 176,420 + RALBFv3_RS00775 0.79 -0.5 176,786 + RALBFv3_RS00780 0.10 -0.2 176,786 + RALBFv3_RS00780 0.10 -1.0 176,810 + RALBFv3_RS00780 0.12 +0.1 176,811 - RALBFv3_RS00780 0.12 -0.3 176,985 - RALBFv3_RS00780 0.25 +0.2 176,985 - RALBFv3_RS00780 0.25 +1.0 177,126 - RALBFv3_RS00780 0.35 -0.7 177,263 + RALBFv3_RS00780 0.45 -0.1 177,264 - RALBFv3_RS00780 0.45 +0.3 177,440 + RALBFv3_RS00780 0.58 -0.3 177,441 - RALBFv3_RS00780 0.58 +0.1 177,441 - RALBFv3_RS00780 0.58 -0.3 177,525 - RALBFv3_RS00780 0.64 +0.2 177,525 - RALBFv3_RS00780 0.64 -1.3 177,590 + RALBFv3_RS00780 0.69 -0.2
Or see this region's nucleotide sequence