Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS00280 and RALBFv3_RS00285 are separated by 52 nucleotides RALBFv3_RS00285 and RALBFv3_RS00290 are separated by 706 nucleotides
RALBFv3_RS00280: RALBFv3_RS00280 - efflux RND transporter periplasmic adaptor subunit, at 63,580 to 64,596
_RS00280
RALBFv3_RS00285: RALBFv3_RS00285 - TolC family protein, at 64,649 to 66,037
_RS00285
RALBFv3_RS00290: RALBFv3_RS00290 - 50S ribosomal protein L3 N(5)-glutamine methyltransferase, at 66,744 to 67,646
_RS00290
Position (kb) 64
65
66
67 Strain fitness (log2 ratio) -1
0
1
2 at 63.756 kb on - strand, within RALBFv3_RS00280 at 63.865 kb on + strand, within RALBFv3_RS00280 at 64.078 kb on + strand, within RALBFv3_RS00280 at 64.443 kb on - strand, within RALBFv3_RS00280 at 64.493 kb on + strand, within RALBFv3_RS00280 at 64.494 kb on - strand, within RALBFv3_RS00280 at 64.807 kb on - strand, within RALBFv3_RS00285 at 64.807 kb on - strand, within RALBFv3_RS00285 at 64.951 kb on - strand, within RALBFv3_RS00285 at 65.173 kb on - strand, within RALBFv3_RS00285 at 65.455 kb on - strand, within RALBFv3_RS00285 at 65.568 kb on - strand, within RALBFv3_RS00285 at 65.619 kb on + strand, within RALBFv3_RS00285 at 66.217 kb on + strand at 66.394 kb on + strand at 66.394 kb on + strand at 66.549 kb on + strand at 66.549 kb on + strand at 66.550 kb on - strand at 66.605 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 63,756 - RALBFv3_RS00280 0.17 -0.0 63,865 + RALBFv3_RS00280 0.28 -0.0 64,078 + RALBFv3_RS00280 0.49 -0.4 64,443 - RALBFv3_RS00280 0.85 -1.0 64,493 + RALBFv3_RS00280 0.90 -0.3 64,494 - RALBFv3_RS00280 0.90 +0.3 64,807 - RALBFv3_RS00285 0.11 +0.7 64,807 - RALBFv3_RS00285 0.11 +1.0 64,951 - RALBFv3_RS00285 0.22 +1.0 65,173 - RALBFv3_RS00285 0.38 -0.8 65,455 - RALBFv3_RS00285 0.58 +0.6 65,568 - RALBFv3_RS00285 0.66 -0.0 65,619 + RALBFv3_RS00285 0.70 +2.0 66,217 + +1.1 66,394 + +0.3 66,394 + +0.1 66,549 + -1.2 66,549 + -0.0 66,550 - +0.6 66,605 + -0.6
Or see this region's nucleotide sequence