Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS00150 and RALBFv3_RS00155 are separated by 159 nucleotides RALBFv3_RS00155 and RALBFv3_RS00160 are separated by 68 nucleotides RALBFv3_RS00160 and RALBFv3_RS00165 are separated by 406 nucleotides
RALBFv3_RS00150: RALBFv3_RS00150 - isocitrate lyase, at 32,625 to 33,929
_RS00150
RALBFv3_RS00155: RALBFv3_RS00155 - universal stress protein, at 34,089 to 34,523
_RS00155
RALBFv3_RS00160: RALBFv3_RS00160 - LysR family transcriptional regulator, at 34,592 to 35,521
_RS00160
RALBFv3_RS00165: RALBFv3_RS00165 - haloacid dehalogenase type II, at 35,928 to 36,629
_RS00165
Position (kb) 34
35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 33.633 kb on + strand, within RALBFv3_RS00150 at 33.678 kb on + strand, within RALBFv3_RS00150 at 33.813 kb on + strand at 34.241 kb on - strand, within RALBFv3_RS00155 at 34.394 kb on - strand, within RALBFv3_RS00155 at 34.415 kb on + strand, within RALBFv3_RS00155 at 34.415 kb on + strand, within RALBFv3_RS00155 at 34.416 kb on - strand, within RALBFv3_RS00155 at 34.417 kb on + strand, within RALBFv3_RS00155 at 34.417 kb on + strand, within RALBFv3_RS00155 at 34.600 kb on + strand at 34.629 kb on + strand at 34.630 kb on - strand at 34.644 kb on + strand at 35.841 kb on + strand at 35.982 kb on + strand at 35.983 kb on - strand at 36.109 kb on - strand, within RALBFv3_RS00165 at 36.148 kb on - strand, within RALBFv3_RS00165
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 33,633 + RALBFv3_RS00150 0.77 -0.6 33,678 + RALBFv3_RS00150 0.81 -0.6 33,813 + -0.1 34,241 - RALBFv3_RS00155 0.35 -0.3 34,394 - RALBFv3_RS00155 0.70 +0.6 34,415 + RALBFv3_RS00155 0.75 -0.0 34,415 + RALBFv3_RS00155 0.75 -0.0 34,416 - RALBFv3_RS00155 0.75 -0.3 34,417 + RALBFv3_RS00155 0.75 +1.4 34,417 + RALBFv3_RS00155 0.75 -1.0 34,600 + -1.9 34,629 + -0.2 34,630 - +0.2 34,644 + -0.3 35,841 + -0.1 35,982 + +0.1 35,983 - +0.6 36,109 - RALBFv3_RS00165 0.26 -1.6 36,148 - RALBFv3_RS00165 0.31 -2.8
Or see this region's nucleotide sequence