Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS00070 and RALBFv3_RS00075 are separated by 39 nucleotides RALBFv3_RS00075 and RALBFv3_RS00080 are separated by 28 nucleotides RALBFv3_RS00080 and RALBFv3_RS00085 are separated by 111 nucleotides
RALBFv3_RS00070: RALBFv3_RS00070 - transporter, at 14,333 to 14,548
_RS00070
RALBFv3_RS00075: RALBFv3_RS00075 - EAL domain-containing protein, at 14,588 to 15,508
_RS00075
RALBFv3_RS00080: RALBFv3_RS00080 - serine hydrolase family protein, at 15,537 to 16,205
_RS00080
RALBFv3_RS00085: RALBFv3_RS00085 - sulfate ABC transporter permease subunit CysT, at 16,317 to 17,237
_RS00085
Position (kb) 15
16
17 Strain fitness (log2 ratio) -1
0
1
2 at 14.664 kb on + strand at 14.664 kb on + strand at 14.664 kb on + strand at 14.665 kb on - strand at 14.902 kb on + strand, within RALBFv3_RS00075 at 14.902 kb on + strand, within RALBFv3_RS00075 at 14.902 kb on + strand, within RALBFv3_RS00075 at 14.903 kb on - strand, within RALBFv3_RS00075 at 14.903 kb on - strand, within RALBFv3_RS00075 at 14.912 kb on + strand, within RALBFv3_RS00075 at 15.339 kb on - strand, within RALBFv3_RS00075 at 15.545 kb on + strand at 15.545 kb on + strand at 16.056 kb on - strand, within RALBFv3_RS00080 at 16.198 kb on - strand at 16.244 kb on - strand at 16.414 kb on - strand, within RALBFv3_RS00085 at 16.525 kb on - strand, within RALBFv3_RS00085 at 16.701 kb on + strand, within RALBFv3_RS00085 at 17.046 kb on + strand, within RALBFv3_RS00085 at 17.046 kb on + strand, within RALBFv3_RS00085 at 17.070 kb on + strand, within RALBFv3_RS00085 at 17.071 kb on - strand, within RALBFv3_RS00085
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 14,664 + +0.1 14,664 + +0.5 14,664 + +0.4 14,665 - +0.4 14,902 + RALBFv3_RS00075 0.34 -0.0 14,902 + RALBFv3_RS00075 0.34 -1.2 14,902 + RALBFv3_RS00075 0.34 +0.6 14,903 - RALBFv3_RS00075 0.34 +0.2 14,903 - RALBFv3_RS00075 0.34 -1.2 14,912 + RALBFv3_RS00075 0.35 -0.7 15,339 - RALBFv3_RS00075 0.82 -0.5 15,545 + -0.8 15,545 + -0.4 16,056 - RALBFv3_RS00080 0.78 +0.6 16,198 - +0.0 16,244 - +0.1 16,414 - RALBFv3_RS00085 0.11 +2.6 16,525 - RALBFv3_RS00085 0.23 +0.2 16,701 + RALBFv3_RS00085 0.42 +0.5 17,046 + RALBFv3_RS00085 0.79 -0.0 17,046 + RALBFv3_RS00085 0.79 -0.0 17,070 + RALBFv3_RS00085 0.82 +0.3 17,071 - RALBFv3_RS00085 0.82 -0.0
Or see this region's nucleotide sequence