Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS00050 and RALBFv3_RS00055 are separated by 31 nucleotides RALBFv3_RS00055 and RALBFv3_RS00060 are separated by 11 nucleotides RALBFv3_RS00060 and RALBFv3_RS00065 are separated by 14 nucleotides
RALBFv3_RS00050: RALBFv3_RS00050 - aliphatic sulfonate ABC transporter substrate-binding protein, at 10,340 to 11,371
_RS00050
RALBFv3_RS00055: RALBFv3_RS00055 - alkanesulfonate monooxygenase, FMNH(2)-dependent, at 11,403 to 12,575
_RS00055
RALBFv3_RS00060: RALBFv3_RS00060 - sulfonate ABC transporter, at 12,587 to 13,393
_RS00060
RALBFv3_RS00065: RALBFv3_RS00065 - sulfonate ABC transporter ATP-binding protein, at 13,408 to 14,262
_RS00065
Position (kb) 11
12
13 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 10.694 kb on + strand, within RALBFv3_RS00050 at 10.881 kb on - strand, within RALBFv3_RS00050 at 10.953 kb on - strand, within RALBFv3_RS00050 at 10.955 kb on + strand, within RALBFv3_RS00050 at 10.955 kb on + strand, within RALBFv3_RS00050 at 11.031 kb on - strand, within RALBFv3_RS00050 at 11.487 kb on + strand at 11.487 kb on + strand at 11.488 kb on - strand at 11.488 kb on - strand at 11.517 kb on - strand at 11.856 kb on + strand, within RALBFv3_RS00055 at 11.856 kb on + strand, within RALBFv3_RS00055 at 11.898 kb on + strand, within RALBFv3_RS00055 at 11.899 kb on - strand, within RALBFv3_RS00055 at 11.989 kb on - strand, within RALBFv3_RS00055 at 13.091 kb on + strand, within RALBFv3_RS00060 at 13.092 kb on - strand, within RALBFv3_RS00060 at 13.238 kb on + strand, within RALBFv3_RS00060
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 10,694 + RALBFv3_RS00050 0.34 +0.6 10,881 - RALBFv3_RS00050 0.52 -0.1 10,953 - RALBFv3_RS00050 0.59 -0.4 10,955 + RALBFv3_RS00050 0.60 +0.8 10,955 + RALBFv3_RS00050 0.60 +0.1 11,031 - RALBFv3_RS00050 0.67 +0.3 11,487 + -0.5 11,487 + +0.2 11,488 - -2.6 11,488 - +1.4 11,517 - -2.8 11,856 + RALBFv3_RS00055 0.39 +0.9 11,856 + RALBFv3_RS00055 0.39 +1.1 11,898 + RALBFv3_RS00055 0.42 +0.4 11,899 - RALBFv3_RS00055 0.42 +0.1 11,989 - RALBFv3_RS00055 0.50 -0.4 13,091 + RALBFv3_RS00060 0.62 -0.5 13,092 - RALBFv3_RS00060 0.63 +0.0 13,238 + RALBFv3_RS00060 0.81 -0.5
Or see this region's nucleotide sequence