Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4898

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
5,808,119	+		Psyr_4896	0.63	-2.1
5,808,263	+		Psyr_4896	0.85	+0.2
5,808,394	+				-2.4
5,808,566	+		Psyr_4897	0.35	-2.1
5,808,567	-		Psyr_4897	0.36	+0.8
5,808,582	+		Psyr_4897	0.38	-1.5
5,808,583	-		Psyr_4897	0.38	+0.4
5,808,660	+		Psyr_4897	0.51	+1.4
5,808,661	-		Psyr_4897	0.51	-1.9
5,808,661	-		Psyr_4897	0.51	-1.2
5,808,916	+				+0.4
5,808,930	+				-3.1
5,808,931	-				-3.1
5,808,931	-				-2.6
5,808,931	-				-0.2
5,808,937	+				-0.0
5,808,937	+				+3.3
5,808,938	-				-1.3
5,808,938	-				-1.1
5,808,992	+				-2.4
5,808,992	+				-1.8
5,808,992	+				+1.5
5,808,993	-				-0.2
5,808,993	-				-0.7
5,808,994	+				+0.6
5,808,994	+				-0.2
5,808,995	-				-1.6
5,808,995	-				-0.8
5,808,995	-				-1.5
5,808,995	-				+1.5
5,809,040	+				-2.6
5,809,045	-				+0.3
5,809,045	-				-1.9
5,809,072	+				+0.4
5,809,076	+				-2.3
5,809,076	+				-0.5
5,809,076	+				-2.9
5,809,076	+				-4.0
5,809,076	+				+1.1
5,809,076	+				-3.5
5,809,076	+				-0.6
5,809,076	+				-0.8
5,809,076	+				-2.6
5,809,076	+				-1.5
5,809,076	+				+0.2
5,809,076	+				-0.6
5,809,076	+				+0.5
5,809,076	+				-1.4
5,809,077	-				-0.9
5,809,077	-				-2.4
5,809,077	-				-1.9
5,809,077	-				-2.8
5,809,077	-				-1.8
5,809,077	-				-0.5
5,809,077	-				-2.6
5,809,077	-				-2.6
5,809,077	-				+0.6
5,809,077	-				+0.4
5,809,077	-				-3.0
5,809,077	-				-2.4
5,809,077	-				-1.2
5,809,077	-				-0.3
5,809,077	-				-0.5
5,809,077	-				-1.1
5,809,077	-				-2.1
5,809,077	-				-1.3
5,809,137	+				-1.1
5,809,137	+				-1.1
5,809,137	+				+0.0
5,809,137	+				-2.0
5,809,137	+				-0.8
5,809,137	+				-2.2
5,809,137	+				-2.1
5,809,138	-				-1.8
5,809,138	-				-3.2
5,809,138	-				-3.1
5,809,138	-				-1.5
5,809,138	-				+1.0
5,809,138	-				-1.6
5,809,138	-				-1.1
5,809,138	-				+0.7
5,809,138	-				-1.9
5,809,138	-				-1.0
5,809,192	-		Psyr_4898	0.12	-1.5
5,809,220	-		Psyr_4898	0.15	+0.1
5,809,288	+		Psyr_4898	0.20	-0.4
5,809,289	-		Psyr_4898	0.20	-0.5
5,809,289	-		Psyr_4898	0.20	-2.0
5,809,392	+		Psyr_4898	0.29	-2.4
5,809,392	+		Psyr_4898	0.29	-1.9
5,809,392	+		Psyr_4898	0.29	-0.5
5,809,393	-		Psyr_4898	0.29	-0.3
5,809,393	-		Psyr_4898	0.29	-2.0
5,809,393	-		Psyr_4898	0.29	-0.9
5,809,393	-		Psyr_4898	0.29	-2.6
5,809,488	+		Psyr_4898	0.37	-0.8
5,809,489	-		Psyr_4898	0.37	+1.0
5,809,517	-		Psyr_4898	0.40	-2.4
5,809,535	-		Psyr_4898	0.41	-0.7
5,809,535	-		Psyr_4898	0.41	-1.4
5,809,563	+		Psyr_4898	0.43	-1.4
5,809,563	+		Psyr_4898	0.43	-1.1
5,809,564	-		Psyr_4898	0.43	-2.0
5,809,564	-		Psyr_4898	0.43	+1.9
5,809,564	-		Psyr_4898	0.43	-1.7
5,809,564	-		Psyr_4898	0.43	-2.7
5,809,564	-		Psyr_4898	0.43	-0.4
5,809,600	-		Psyr_4898	0.46	-1.3
5,809,795	-		Psyr_4898	0.63	-2.0
5,809,893	+		Psyr_4898	0.71	-2.1
5,809,893	+		Psyr_4898	0.71	-1.6
5,809,893	+		Psyr_4898	0.71	+2.3
5,809,894	-		Psyr_4898	0.71	-1.5
5,809,894	-		Psyr_4898	0.71	+1.4
5,809,913	+		Psyr_4898	0.72	-0.6
5,809,913	+		Psyr_4898	0.72	-2.2
5,809,913	+		Psyr_4898	0.72	-2.9
5,809,913	+		Psyr_4898	0.72	+0.5
5,809,914	-		Psyr_4898	0.73	+0.1
5,809,914	-		Psyr_4898	0.73	-1.7
5,809,914	-		Psyr_4898	0.73	+1.3
5,809,914	-		Psyr_4898	0.73	-0.2
5,809,914	-		Psyr_4898	0.73	-1.8
5,810,019	+		Psyr_4898	0.81	-0.6
5,810,046	+		Psyr_4898	0.84	-1.0
5,810,047	-		Psyr_4898	0.84	-1.9
5,810,097	-		Psyr_4898	0.88	-1.5
5,810,134	-				+0.5
5,810,136	+				-3.1
5,810,136	+				-1.6
5,810,136	+				-1.8
5,810,136	+				-0.4
5,810,137	-				-1.5
5,810,137	-				-0.9
5,810,137	-				-1.5
5,810,137	-				-0.6
5,810,137	-				-2.7
5,810,220	+				-1.4
5,810,220	+				-0.7
5,810,221	-				+0.2
5,810,281	-				+2.6
5,810,285	+				-1.1
5,810,285	+				-1.2
5,810,285	+				+2.5
5,810,285	+				+1.3
5,810,285	+				+2.4
5,810,286	-				-1.7
5,810,286	-				+1.0
5,810,286	-				+1.4
5,810,286	-				-0.2
5,810,286	-				-0.2
5,810,286	-				+0.5
5,810,286	-				-0.3
5,810,294	-				+0.8
5,810,294	-				-0.7
5,810,321	+				+1.1
5,810,321	+				+0.1
5,810,321	+				-0.1
5,810,321	+				+0.3
5,810,321	+				+0.3
5,810,322	-				+0.8
5,810,322	-				-2.9
5,810,322	-				-0.7
5,810,322	-				-0.1
5,810,322	-				+0.1
5,810,322	-				-1.1
5,810,322	-				+1.0
5,810,322	-				-0.1
5,810,322	-				+1.4
5,810,322	-				+2.2
5,810,325	+				+2.6
5,810,325	+				+0.7
5,810,325	+				-2.3
5,810,325	+				-0.2
5,810,325	+				+1.3
5,810,325	+				+0.2
5,810,325	+				+1.0
5,810,325	+				+0.8
5,810,325	+				+0.9
5,810,325	+				+0.8
5,810,326	-				-1.5
5,810,326	-				-0.9
5,810,326	-				+0.7
5,810,326	-				-1.4
5,810,326	-				+1.6
5,810,326	-				+0.2
5,810,326	-				+0.2
5,810,326	-				-1.1
5,810,326	-				-0.6
5,810,326	-				-1.0
5,810,326	-				+0.7
5,810,326	-				-0.4
5,810,339	+				-0.6
5,810,339	+				-0.2
5,810,340	-				+1.3
5,810,340	-				-0.6
5,810,358	-				-1.1
5,810,461	-				+0.8
5,810,655	+		Psyr_4899	0.12	-0.0
5,810,655	+		Psyr_4899	0.12	+1.8
5,810,655	+		Psyr_4899	0.12	-0.5
5,810,655	+		Psyr_4899	0.12	+1.9
5,810,655	+		Psyr_4899	0.12	-0.4
5,810,655	+		Psyr_4899	0.12	+0.5
5,810,655	+		Psyr_4899	0.12	-1.2
5,810,655	+		Psyr_4899	0.12	-1.5
5,810,655	+		Psyr_4899	0.12	+0.1
5,810,656	-		Psyr_4899	0.12	+1.8
5,810,656	-		Psyr_4899	0.12	+0.9
5,810,656	-		Psyr_4899	0.12	+1.9
5,810,656	-		Psyr_4899	0.12	+0.3
5,810,656	-		Psyr_4899	0.12	+0.7
5,810,656	-		Psyr_4899	0.12	+0.5
5,810,693	-		Psyr_4899	0.14	-0.1
5,810,702	+		Psyr_4899	0.15	+0.8
5,810,724	+		Psyr_4899	0.16	+0.7
5,810,724	+		Psyr_4899	0.16	-0.3
5,810,725	-		Psyr_4899	0.16	+0.4
5,810,725	-		Psyr_4899	0.16	+1.2
5,810,725	-		Psyr_4899	0.16	+0.6
5,810,725	-		Psyr_4899	0.16	-0.4
5,810,725	-		Psyr_4899	0.16	-0.2
5,810,725	-		Psyr_4899	0.16	+1.4
5,810,725	-		Psyr_4899	0.16	-1.7
5,810,725	-		Psyr_4899	0.16	+2.3
5,810,725	-		Psyr_4899	0.16	+1.2
5,810,725	-		Psyr_4899	0.16	+1.1
5,810,725	-		Psyr_4899	0.16	-1.5
5,810,725	-		Psyr_4899	0.16	+0.9
5,810,739	+		Psyr_4899	0.17	-0.7
5,810,775	+		Psyr_4899	0.19	-0.9
5,810,775	+		Psyr_4899	0.19	+0.8
5,810,776	-		Psyr_4899	0.19	-1.3
5,810,787	+		Psyr_4899	0.20	+0.5
5,810,787	+		Psyr_4899	0.20	+0.7
5,810,787	+		Psyr_4899	0.20	+0.9
5,810,787	+		Psyr_4899	0.20	+1.9
5,810,787	+		Psyr_4899	0.20	+0.2
5,810,788	-		Psyr_4899	0.20	+1.1
5,810,788	-		Psyr_4899	0.20	+0.7
5,810,788	-		Psyr_4899	0.20	+0.8
5,810,788	-		Psyr_4899	0.20	+0.5
5,810,890	-		Psyr_4899	0.26	-1.7
5,810,919	+		Psyr_4899	0.28	+1.4
5,810,919	+		Psyr_4899	0.28	-0.4
5,810,919	+		Psyr_4899	0.28	+1.7
5,810,920	-		Psyr_4899	0.28	-0.5
5,810,920	-		Psyr_4899	0.28	+1.1
5,810,997	+		Psyr_4899	0.32	-0.2
5,810,998	-		Psyr_4899	0.32	+0.2
5,810,998	-		Psyr_4899	0.32	+0.1
5,811,030	+		Psyr_4899	0.34	-0.7
5,811,030	+		Psyr_4899	0.34	-3.2
5,811,030	+		Psyr_4899	0.34	-0.3
5,811,030	+		Psyr_4899	0.34	-1.3
5,811,030	+		Psyr_4899	0.34	-1.7
5,811,030	+		Psyr_4899	0.34	+0.3
5,811,030	+		Psyr_4899	0.34	-0.2
5,811,030	+		Psyr_4899	0.34	+0.9
5,811,031	-		Psyr_4899	0.34	+0.7
5,811,031	-		Psyr_4899	0.34	-0.8
5,811,031	-		Psyr_4899	0.34	-0.7
5,811,031	-		Psyr_4899	0.34	+0.7
5,811,031	-		Psyr_4899	0.34	-1.8
5,811,031	-		Psyr_4899	0.34	+0.2
5,811,031	-		Psyr_4899	0.34	+2.3
5,811,031	-		Psyr_4899	0.34	-0.0
5,811,031	-		Psyr_4899	0.34	+1.4
5,811,031	-		Psyr_4899	0.34	+3.4
5,811,031	-		Psyr_4899	0.34	-1.8
5,811,031	-		Psyr_4899	0.34	-0.1
5,811,031	-		Psyr_4899	0.34	-1.5
5,811,203	+		Psyr_4899	0.45	-2.1
5,811,203	+		Psyr_4899	0.45	+0.3
5,811,204	-		Psyr_4899	0.45	-0.4