Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4468 and Psyr_4469 are separated by 302 nucleotides Psyr_4469 and Psyr_4470 are separated by 69 nucleotides Psyr_4470 and Psyr_4471 are separated by 1 nucleotides
Psyr_4468: Psyr_4468 - conserved hypothetical protein, at 5,329,262 to 5,329,684
_4468
Psyr_4469: Psyr_4469 - conserved hypothetical protein, at 5,329,987 to 5,330,574
_4469
Psyr_4470: Psyr_4470 - ABC transporter, at 5,330,644 to 5,331,354
_4470
Psyr_4471: Psyr_4471 - Protein of unknown function DUF214, at 5,331,356 to 5,332,621
_4471
Position (kb) 5330
5331
5332 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5329.688 kb on + strand at 5329.688 kb on + strand at 5329.689 kb on - strand at 5329.689 kb on - strand at 5329.689 kb on - strand at 5329.689 kb on - strand at 5329.689 kb on - strand at 5329.689 kb on - strand at 5329.796 kb on + strand at 5329.824 kb on + strand at 5329.824 kb on + strand at 5329.825 kb on - strand at 5329.825 kb on - strand at 5329.828 kb on + strand at 5329.828 kb on + strand at 5329.828 kb on + strand at 5329.828 kb on + strand at 5329.828 kb on + strand at 5329.828 kb on + strand at 5329.828 kb on + strand at 5329.828 kb on + strand at 5329.829 kb on - strand at 5329.829 kb on - strand at 5329.829 kb on - strand at 5329.834 kb on + strand at 5329.834 kb on + strand at 5329.834 kb on + strand at 5329.835 kb on - strand at 5329.835 kb on - strand at 5329.942 kb on - strand at 5329.968 kb on + strand at 5329.986 kb on + strand at 5330.111 kb on + strand, within Psyr_4469 at 5330.414 kb on - strand, within Psyr_4469 at 5330.414 kb on - strand, within Psyr_4469 at 5330.504 kb on + strand, within Psyr_4469 at 5330.504 kb on + strand, within Psyr_4469 at 5330.505 kb on - strand, within Psyr_4469 at 5330.505 kb on - strand, within Psyr_4469 at 5330.589 kb on - strand at 5330.589 kb on - strand at 5330.589 kb on - strand at 5330.617 kb on - strand at 5330.905 kb on + strand, within Psyr_4470 at 5331.177 kb on + strand, within Psyr_4470 at 5331.177 kb on + strand, within Psyr_4470 at 5331.177 kb on + strand, within Psyr_4470 at 5331.177 kb on + strand, within Psyr_4470 at 5331.178 kb on - strand, within Psyr_4470 at 5331.178 kb on - strand, within Psyr_4470 at 5331.178 kb on - strand, within Psyr_4470 at 5331.359 kb on + strand at 5331.359 kb on + strand at 5331.359 kb on + strand at 5331.359 kb on + strand at 5331.359 kb on + strand at 5331.359 kb on + strand at 5331.359 kb on + strand at 5331.359 kb on + strand at 5331.359 kb on + strand at 5331.359 kb on + strand at 5331.359 kb on + strand at 5331.359 kb on + strand at 5331.359 kb on + strand at 5331.359 kb on + strand at 5331.359 kb on + strand at 5331.359 kb on + strand at 5331.359 kb on + strand at 5331.359 kb on + strand at 5331.359 kb on + strand at 5331.359 kb on + strand at 5331.359 kb on + strand at 5331.359 kb on + strand at 5331.360 kb on - strand at 5331.360 kb on - strand at 5331.360 kb on - strand at 5331.360 kb on - strand at 5331.360 kb on - strand at 5331.360 kb on - strand at 5331.360 kb on - strand at 5331.360 kb on - strand at 5331.360 kb on - strand at 5331.360 kb on - strand at 5331.360 kb on - strand at 5331.360 kb on - strand at 5331.360 kb on - strand at 5331.360 kb on - strand at 5331.360 kb on - strand at 5331.360 kb on - strand at 5331.360 kb on - strand at 5331.360 kb on - strand at 5331.360 kb on - strand at 5331.560 kb on + strand, within Psyr_4471 at 5331.560 kb on + strand, within Psyr_4471 at 5331.561 kb on - strand, within Psyr_4471 at 5331.561 kb on - strand, within Psyr_4471 at 5331.710 kb on + strand, within Psyr_4471 at 5331.711 kb on - strand, within Psyr_4471 at 5331.711 kb on - strand, within Psyr_4471 at 5331.711 kb on - strand, within Psyr_4471 at 5331.723 kb on - strand, within Psyr_4471 at 5331.827 kb on + strand, within Psyr_4471 at 5331.827 kb on + strand, within Psyr_4471 at 5331.827 kb on + strand, within Psyr_4471 at 5331.827 kb on + strand, within Psyr_4471 at 5331.827 kb on + strand, within Psyr_4471 at 5331.828 kb on - strand, within Psyr_4471 at 5331.828 kb on - strand, within Psyr_4471 at 5331.828 kb on - strand, within Psyr_4471 at 5331.828 kb on - strand, within Psyr_4471 at 5331.958 kb on + strand, within Psyr_4471 at 5332.055 kb on - strand, within Psyr_4471 at 5332.055 kb on - strand, within Psyr_4471
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 5,329,688 + +0.1 5,329,688 + +0.2 5,329,689 - +0.1 5,329,689 - -0.6 5,329,689 - -0.3 5,329,689 - +0.1 5,329,689 - -0.8 5,329,689 - -1.2 5,329,796 + -0.2 5,329,824 + -1.6 5,329,824 + -2.3 5,329,825 - -0.0 5,329,825 - -0.5 5,329,828 + -0.5 5,329,828 + -1.7 5,329,828 + +0.4 5,329,828 + +2.2 5,329,828 + +1.2 5,329,828 + +0.5 5,329,828 + +0.9 5,329,828 + +1.4 5,329,829 - -0.4 5,329,829 - +0.1 5,329,829 - -1.0 5,329,834 + -0.3 5,329,834 + +0.0 5,329,834 + +1.2 5,329,835 - +1.0 5,329,835 - -0.2 5,329,942 - -0.7 5,329,968 + -1.6 5,329,986 + -0.0 5,330,111 + Psyr_4469 0.21 -1.4 5,330,414 - Psyr_4469 0.73 -0.2 5,330,414 - Psyr_4469 0.73 +1.3 5,330,504 + Psyr_4469 0.88 -0.9 5,330,504 + Psyr_4469 0.88 +0.3 5,330,505 - Psyr_4469 0.88 -0.3 5,330,505 - Psyr_4469 0.88 -0.5 5,330,589 - +0.6 5,330,589 - +0.8 5,330,589 - +0.3 5,330,617 - +0.4 5,330,905 + Psyr_4470 0.37 -1.4 5,331,177 + Psyr_4470 0.75 -0.2 5,331,177 + Psyr_4470 0.75 -1.2 5,331,177 + Psyr_4470 0.75 +0.9 5,331,177 + Psyr_4470 0.75 +0.1 5,331,178 - Psyr_4470 0.75 -1.3 5,331,178 - Psyr_4470 0.75 -2.6 5,331,178 - Psyr_4470 0.75 -0.8 5,331,359 + -0.6 5,331,359 + -1.0 5,331,359 + -2.4 5,331,359 + -0.6 5,331,359 + -1.8 5,331,359 + +2.2 5,331,359 + -1.0 5,331,359 + -0.3 5,331,359 + +2.6 5,331,359 + +0.3 5,331,359 + -0.8 5,331,359 + +0.6 5,331,359 + -0.9 5,331,359 + -0.3 5,331,359 + -1.7 5,331,359 + -0.9 5,331,359 + +1.4 5,331,359 + -1.1 5,331,359 + +0.6 5,331,359 + -0.1 5,331,359 + +0.2 5,331,359 + -2.4 5,331,360 - -0.6 5,331,360 - +1.2 5,331,360 - -0.3 5,331,360 - -1.2 5,331,360 - -1.5 5,331,360 - +0.3 5,331,360 - +1.1 5,331,360 - +0.2 5,331,360 - +0.2 5,331,360 - -0.3 5,331,360 - -0.1 5,331,360 - -1.6 5,331,360 - -2.7 5,331,360 - -0.6 5,331,360 - +0.6 5,331,360 - -0.8 5,331,360 - -2.3 5,331,360 - +1.4 5,331,360 - -1.0 5,331,560 + Psyr_4471 0.16 -1.7 5,331,560 + Psyr_4471 0.16 +1.4 5,331,561 - Psyr_4471 0.16 -1.9 5,331,561 - Psyr_4471 0.16 -1.0 5,331,710 + Psyr_4471 0.28 -1.6 5,331,711 - Psyr_4471 0.28 -1.4 5,331,711 - Psyr_4471 0.28 +0.5 5,331,711 - Psyr_4471 0.28 +0.4 5,331,723 - Psyr_4471 0.29 -0.9 5,331,827 + Psyr_4471 0.37 +0.9 5,331,827 + Psyr_4471 0.37 -0.2 5,331,827 + Psyr_4471 0.37 +1.5 5,331,827 + Psyr_4471 0.37 +1.2 5,331,827 + Psyr_4471 0.37 -2.1 5,331,828 - Psyr_4471 0.37 +0.9 5,331,828 - Psyr_4471 0.37 +1.4 5,331,828 - Psyr_4471 0.37 -2.5 5,331,828 - Psyr_4471 0.37 -0.6 5,331,958 + Psyr_4471 0.48 -0.1 5,332,055 - Psyr_4471 0.55 -0.0 5,332,055 - Psyr_4471 0.55 -0.3
Or see this region's nucleotide sequence