Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4130

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
4,918,230	+				+1.3
4,918,230	+				-0.0
4,918,231	-				+3.0
4,918,231	-				-1.7
4,918,231	-				-0.7
4,918,279	+				-1.6
4,918,279	+				-3.0
4,918,280	-				-1.2
4,918,280	-				+0.4
4,918,285	+				-0.4
4,918,285	+				+0.0
4,918,285	+				-1.4
4,918,286	-				+0.4
4,918,335	+				-1.6
4,918,335	+				-1.3
4,918,335	+				-0.5
4,918,335	+				-0.3
4,918,335	+				+0.6
4,918,335	+				+0.3
4,918,336	-				+1.7
4,918,336	-				-0.7
4,918,336	-				+1.3
4,918,336	-				-2.6
4,918,365	-				+1.0
4,918,365	-				+0.1
4,918,365	-				+1.9
4,918,446	+		Psyr_4129	0.18	+0.8
4,918,517	+		Psyr_4129	0.28	-1.3
4,918,517	+		Psyr_4129	0.28	+2.3
4,918,517	+		Psyr_4129	0.28	+0.5
4,918,517	+		Psyr_4129	0.28	+1.4
4,918,517	+		Psyr_4129	0.28	-1.2
4,918,517	+		Psyr_4129	0.28	-0.6
4,918,517	+		Psyr_4129	0.28	-0.2
4,918,517	+		Psyr_4129	0.28	+1.2
4,918,517	+		Psyr_4129	0.28	-2.0
4,918,517	+		Psyr_4129	0.28	+1.4
4,918,517	+		Psyr_4129	0.28	+0.8
4,918,517	+		Psyr_4129	0.28	+1.1
4,918,517	+		Psyr_4129	0.28	+0.1
4,918,518	-		Psyr_4129	0.28	+0.2
4,918,518	-		Psyr_4129	0.28	-0.5
4,918,518	-		Psyr_4129	0.28	-1.5
4,918,518	-		Psyr_4129	0.28	+0.9
4,918,518	-		Psyr_4129	0.28	+0.8
4,918,518	-		Psyr_4129	0.28	-1.9
4,918,518	-		Psyr_4129	0.28	-0.4
4,918,518	-		Psyr_4129	0.28	-0.2
4,918,518	-		Psyr_4129	0.28	+0.8
4,918,518	-		Psyr_4129	0.28	-0.5
4,918,518	-		Psyr_4129	0.28	-0.2
4,918,518	-		Psyr_4129	0.28	-0.9
4,918,518	-		Psyr_4129	0.28	+1.8
4,918,518	-		Psyr_4129	0.28	+0.1
4,918,518	-		Psyr_4129	0.28	+1.7
4,918,518	-		Psyr_4129	0.28	-1.3
4,918,772	+		Psyr_4129	0.61	-0.3
4,918,772	+		Psyr_4129	0.61	+0.1
4,918,773	-		Psyr_4129	0.62	-1.4
4,918,828	-		Psyr_4129	0.69	-0.6
4,918,862	+		Psyr_4129	0.73	+0.3
4,918,994	+				-0.2
4,918,994	+				-1.2
4,918,994	+				+0.8
4,919,022	-				-0.9
4,919,064	+				-0.6
4,919,065	-				-1.3
4,919,075	+				-1.1
4,919,075	+				-0.9
4,919,075	+				-0.3
4,919,075	+				-0.4
4,919,075	+				+1.5
4,919,075	+				-0.3
4,919,076	-				+0.6
4,919,076	-				-2.7
4,919,076	-				-1.0
4,919,079	+				-1.0
4,919,079	+				-1.3
4,919,079	+				+0.2
4,919,079	+				-0.7
4,919,079	+				+1.4
4,919,079	+				+0.9
4,919,079	+				+1.1
4,919,080	-				-1.9
4,919,080	-				-2.2
4,919,101	+				-0.0
4,919,101	+				+0.3
4,919,102	-				-1.2
4,919,102	-				-1.6
4,919,102	-				-4.3
4,919,107	+				+1.9
4,919,107	+				+0.7
4,919,107	+				-0.2
4,919,107	+				-0.2
4,919,107	+				-0.3
4,919,107	+				+0.0
4,919,107	+				-0.4
4,919,107	+				+2.0
4,919,107	+				+0.2
4,919,108	-				-1.6
4,919,108	-				-1.4
4,919,108	-				+2.3
4,919,108	-				-2.5
4,919,108	-				-0.4
4,919,108	-				+0.6
4,919,108	-				-2.0
4,919,108	-				-2.4
4,919,108	-				+1.6
4,919,108	-				-1.2
4,919,109	+				-0.1
4,919,109	+				+0.8
4,919,109	+				+1.7
4,919,110	-				-1.9
4,919,110	-				-2.4
4,919,173	+				-3.1
4,919,173	+				-2.2
4,919,173	+				-0.1
4,919,173	+				-2.4
4,919,242	-				-2.3
4,919,338	+		Psyr_4130	0.14	-3.8
4,919,338	+		Psyr_4130	0.14	-2.7
4,919,338	+		Psyr_4130	0.14	-1.2
4,919,338	+		Psyr_4130	0.14	-3.8
4,919,338	+		Psyr_4130	0.14	-0.5
4,919,339	-		Psyr_4130	0.14	-3.8
4,919,383	+		Psyr_4130	0.18	-3.0
4,919,383	+		Psyr_4130	0.18	-4.7
4,919,383	+		Psyr_4130	0.18	-1.6
4,919,383	+		Psyr_4130	0.18	-2.2
4,919,384	-		Psyr_4130	0.18	-0.3
4,919,384	-		Psyr_4130	0.18	-3.2
4,919,384	-		Psyr_4130	0.18	-1.8
4,919,386	-		Psyr_4130	0.18	-2.2
4,919,524	+		Psyr_4130	0.30	-1.6
4,919,524	+		Psyr_4130	0.30	-0.2
4,919,524	+		Psyr_4130	0.30	-1.9
4,919,524	+		Psyr_4130	0.30	-3.2
4,919,524	+		Psyr_4130	0.30	-1.6
4,919,525	-		Psyr_4130	0.30	+0.4
4,919,525	-		Psyr_4130	0.30	-0.4
4,919,525	-		Psyr_4130	0.30	-2.7
4,919,528	+		Psyr_4130	0.30	-2.7
4,919,528	+		Psyr_4130	0.30	-2.3
4,919,528	+		Psyr_4130	0.30	-0.6
4,919,528	+		Psyr_4130	0.30	-2.4
4,919,528	+		Psyr_4130	0.30	-1.6
4,919,528	+		Psyr_4130	0.30	-3.5
4,919,528	+		Psyr_4130	0.30	-1.6
4,919,528	+		Psyr_4130	0.30	-2.5
4,919,528	+		Psyr_4130	0.30	-2.9
4,919,528	+		Psyr_4130	0.30	-3.6
4,919,528	+		Psyr_4130	0.30	-2.0
4,919,528	+		Psyr_4130	0.30	-0.9
4,919,529	-		Psyr_4130	0.30	-2.4
4,919,529	-		Psyr_4130	0.30	-1.7
4,919,529	-		Psyr_4130	0.30	-2.7
4,919,529	-		Psyr_4130	0.30	-0.8
4,919,529	-		Psyr_4130	0.30	-2.3
4,919,529	-		Psyr_4130	0.30	-0.9
4,919,529	-		Psyr_4130	0.30	-2.7
4,919,529	-		Psyr_4130	0.30	-1.2
4,919,529	-		Psyr_4130	0.30	-0.9
4,919,809	+		Psyr_4130	0.55	-2.6
4,919,809	+		Psyr_4130	0.55	-3.0
4,919,809	+		Psyr_4130	0.55	+0.4
4,919,809	+		Psyr_4130	0.55	-0.4
4,919,809	+		Psyr_4130	0.55	+0.3
4,919,809	+		Psyr_4130	0.55	-0.5
4,919,809	+		Psyr_4130	0.55	-2.8
4,919,809	+		Psyr_4130	0.55	-2.9
4,919,809	+		Psyr_4130	0.55	-2.5
4,919,810	-		Psyr_4130	0.55	-1.7
4,919,810	-		Psyr_4130	0.55	-1.5
4,919,810	-		Psyr_4130	0.55	-1.4
4,919,810	-		Psyr_4130	0.55	-2.2
4,919,810	-		Psyr_4130	0.55	-2.6
4,919,810	-		Psyr_4130	0.55	-2.3
4,919,901	+		Psyr_4130	0.62	-3.6
4,920,345	+				+0.7
4,920,345	+				-1.1
4,920,360	+				+0.1
4,920,360	+				-0.4
4,920,361	-				+0.2
4,920,388	-				+0.6
4,920,455	-				-1.3
4,920,457	-				-0.0
4,920,457	-				+1.6
4,920,457	-				-1.8
4,920,457	-				+0.7
4,920,457	-				+0.7
4,920,459	-				-1.1
4,920,459	-				+0.3
4,920,459	-				-0.1
4,921,117	+				-0.5
4,921,117	+				-0.2
4,921,117	+				+2.9
4,921,189	+				+0.0
4,921,190	-				+1.0
4,921,190	-				+1.1
4,921,190	-				+1.7
4,921,190	-				-0.6
4,921,190	-				+2.0
4,921,190	-				+1.3