Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3636

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
4,315,979	+		Psyr_3634	0.36	+1.3
4,315,979	+		Psyr_3634	0.36	+0.6
4,315,979	+		Psyr_3634	0.36	-2.9
4,315,979	+		Psyr_3634	0.36	+0.9
4,315,979	+		Psyr_3634	0.36	-1.0
4,315,980	-		Psyr_3634	0.36	-0.8
4,315,980	-		Psyr_3634	0.36	+0.3
4,315,980	-		Psyr_3634	0.36	-1.4
4,316,041	+		Psyr_3634	0.47	+0.8
4,316,041	+		Psyr_3634	0.47	+0.2
4,316,042	-		Psyr_3634	0.47	+4.0
4,316,042	-		Psyr_3634	0.47	-0.1
4,316,045	+		Psyr_3634	0.48	+0.1
4,316,094	+		Psyr_3634	0.56	+0.9
4,316,094	+		Psyr_3634	0.56	-0.5
4,316,094	+		Psyr_3634	0.56	+1.1
4,316,094	+		Psyr_3634	0.56	+0.1
4,316,095	-		Psyr_3634	0.56	+0.8
4,316,095	-		Psyr_3634	0.56	-0.1
4,316,095	-		Psyr_3634	0.56	-0.8
4,316,095	-		Psyr_3634	0.56	-0.5
4,316,095	-		Psyr_3634	0.56	-0.2
4,316,142	+		Psyr_3634	0.65	-1.6
4,316,142	+		Psyr_3634	0.65	+0.6
4,316,234	+		Psyr_3634	0.81	+0.5
4,316,234	+		Psyr_3634	0.81	-1.7
4,316,235	-		Psyr_3634	0.81	-1.0
4,316,324	+				+0.5
4,316,324	+				+0.3
4,316,358	+				-1.5
4,316,358	+				-2.6
4,316,358	+				+0.9
4,316,358	+				+0.2
4,316,359	-				-0.4
4,316,359	-				-0.8
4,316,390	-				-0.4
4,316,391	+				+0.0
4,316,392	-				+1.8
4,316,504	-		Psyr_3635	0.16	-1.1
4,316,504	-		Psyr_3635	0.16	+0.4
4,316,808	+				-0.1
4,316,808	+				-1.6
4,316,808	+				-1.6
4,316,808	+				+2.0
4,316,808	+				+0.9
4,316,808	+				+0.7
4,316,809	-				+0.2
4,316,809	-				-1.0
4,316,812	+				+1.5
4,316,812	+				-0.7
4,316,812	+				+0.1
4,316,812	+				+1.7
4,316,813	-				-0.5
4,316,813	-				-0.0
4,316,813	-				+2.5
4,316,813	-				+1.5
4,316,813	-				-1.0
4,316,822	+				+1.3
4,316,864	-				+1.1
4,316,927	+				+0.9
4,316,927	+				+2.0
4,316,927	+				-2.7
4,316,928	-				+2.3
4,316,928	-				-0.8
4,316,994	-				+0.7
4,316,994	-				+0.2
4,317,024	+				-2.6
4,317,024	+				+0.7
4,317,024	+				-0.8
4,317,024	+				-1.6
4,317,025	-				-1.8
4,317,025	-				-0.2
4,317,025	-				-2.0
4,317,068	+				+1.8
4,317,069	-				-1.4
4,317,118	+				-1.9
4,317,118	+				-2.2
4,317,118	+				-0.6
4,317,118	+				-1.4
4,317,118	+				-1.4
4,317,118	+				-0.4
4,317,118	+				-3.9
4,317,118	+				-3.0
4,317,118	+				-1.4
4,317,118	+				+1.8
4,317,119	-				-0.9
4,317,119	-				-1.4
4,317,119	-				-0.6
4,317,119	-				-0.4
4,317,119	-				-0.3
4,317,206	+		Psyr_3636	0.12	-1.5
4,317,207	-		Psyr_3636	0.12	-0.4
4,317,541	-		Psyr_3636	0.29	-2.3
4,317,563	+		Psyr_3636	0.30	-2.9
4,317,563	+		Psyr_3636	0.30	-1.6
4,317,563	+		Psyr_3636	0.30	-1.6
4,317,622	+		Psyr_3636	0.33	-1.6
4,317,745	-		Psyr_3636	0.39	+1.5
4,317,777	+		Psyr_3636	0.41	-0.8
4,317,777	+		Psyr_3636	0.41	-0.8
4,317,777	+		Psyr_3636	0.41	-0.8
4,317,777	+		Psyr_3636	0.41	-2.4
4,317,778	-		Psyr_3636	0.41	-0.4
4,317,806	+		Psyr_3636	0.42	+0.2
4,317,807	-		Psyr_3636	0.42	-0.9
4,317,807	-		Psyr_3636	0.42	-2.9
4,317,822	-		Psyr_3636	0.43	+0.1
4,317,890	-		Psyr_3636	0.46	-1.1
4,317,956	+		Psyr_3636	0.50	-2.6
4,317,956	+		Psyr_3636	0.50	-2.1
4,317,988	+		Psyr_3636	0.51	-1.8
4,317,988	+		Psyr_3636	0.51	-0.6
4,317,989	-		Psyr_3636	0.51	-3.3
4,317,989	-		Psyr_3636	0.51	-0.8
4,317,989	-		Psyr_3636	0.51	-0.7
4,318,012	+		Psyr_3636	0.52	-2.0
4,318,012	+		Psyr_3636	0.52	+0.2
4,318,012	+		Psyr_3636	0.52	-1.7
4,318,012	+		Psyr_3636	0.52	-3.4
4,318,013	-		Psyr_3636	0.52	-0.8
4,318,013	-		Psyr_3636	0.52	-2.1
4,318,013	-		Psyr_3636	0.52	-2.0
4,318,013	-		Psyr_3636	0.52	-0.9
4,318,013	-		Psyr_3636	0.52	-2.6
4,318,013	-		Psyr_3636	0.52	-1.3
4,318,013	-		Psyr_3636	0.52	-1.6
4,318,210	+		Psyr_3636	0.62	-1.0
4,318,210	+		Psyr_3636	0.62	-0.7
4,318,210	+		Psyr_3636	0.62	+1.3
4,318,210	+		Psyr_3636	0.62	-0.5
4,318,211	-		Psyr_3636	0.62	-0.8
4,318,211	-		Psyr_3636	0.62	-0.2
4,318,211	-		Psyr_3636	0.62	-0.1
4,318,312	+		Psyr_3636	0.67	-0.8
4,318,312	+		Psyr_3636	0.67	-2.9
4,318,313	-		Psyr_3636	0.67	-1.5
4,318,313	-		Psyr_3636	0.67	-2.9
4,318,340	+		Psyr_3636	0.69	-2.3
4,318,466	+		Psyr_3636	0.75	-2.1
4,318,547	+		Psyr_3636	0.79	-2.1
4,318,547	+		Psyr_3636	0.79	-0.7
4,318,548	-		Psyr_3636	0.79	-3.0
4,318,548	-		Psyr_3636	0.79	+1.5
4,318,548	-		Psyr_3636	0.79	-0.6
4,318,548	-		Psyr_3636	0.79	-0.4
4,318,548	-		Psyr_3636	0.79	-1.1
4,318,602	-		Psyr_3636	0.82	-0.2
4,318,641	+		Psyr_3636	0.84	-1.3
4,318,641	+		Psyr_3636	0.84	-0.0
4,318,647	-		Psyr_3636	0.84	-2.3
4,318,647	-		Psyr_3636	0.84	-2.0
4,318,652	+		Psyr_3636	0.84	-4.1
4,318,652	+		Psyr_3636	0.84	-0.4
4,318,652	+		Psyr_3636	0.84	+0.5
4,318,653	-		Psyr_3636	0.84	-3.2
4,318,653	-		Psyr_3636	0.84	-1.6
4,318,653	-		Psyr_3636	0.84	-0.6
4,318,653	-		Psyr_3636	0.84	+0.1
4,318,659	+		Psyr_3636	0.85	-1.4
4,318,659	+		Psyr_3636	0.85	-0.1
4,318,659	+		Psyr_3636	0.85	-2.3
4,318,660	-		Psyr_3636	0.85	-1.8
4,318,727	+		Psyr_3636	0.88	-1.2
4,318,727	+		Psyr_3636	0.88	-0.7
4,318,728	-		Psyr_3636	0.88	-2.2
4,318,728	-		Psyr_3636	0.88	-0.8
4,318,745	+		Psyr_3636	0.89	-2.4
4,318,849	+				-0.1
4,318,887	+				-3.2
4,318,887	+				-1.3
4,318,888	-				-3.3
4,318,909	+				-2.0
4,318,909	+				-2.4
4,318,910	-				+1.0
4,318,939	+				-0.8
4,318,973	-				-0.9
4,319,030	+				-1.4
4,319,030	+				-3.1
4,319,030	+				-0.4
4,319,030	+				-2.7
4,319,030	+				-1.8
4,319,030	+				-1.9
4,319,030	+				-1.7
4,319,030	+				-1.4
4,319,030	+				-3.1
4,319,030	+				-1.1
4,319,030	+				+3.4
4,319,030	+				-1.8
4,319,030	+				-1.6
4,319,031	-				+0.6
4,319,031	-				-0.2
4,319,031	-				+1.3
4,319,031	-				-1.0
4,319,031	-				-1.3
4,319,031	-				-0.5
4,319,031	-				+1.6
4,319,031	-				-0.1
4,319,031	-				+1.4
4,319,031	-				+0.1
4,319,031	-				-0.3
4,319,031	-				+0.2
4,319,063	+				-2.7
4,319,069	-				-0.6
4,319,128	-				-3.1
4,319,128	-				-2.0
4,319,136	+				+2.0
4,319,136	+				-2.0
4,319,136	+				+0.7
4,319,136	+				-3.1
4,319,136	+				-2.3
4,319,136	+				-0.7
4,319,137	-				+0.2
4,319,137	-				-2.9
4,319,137	-				+0.4
4,319,137	-				-0.3
4,319,137	-				-2.1
4,319,138	+				-4.1
4,319,138	+				-0.9
4,319,138	+				-0.5
4,319,138	+				-1.4
4,319,138	+				-2.0
4,319,138	+				+1.0
4,319,138	+				+0.1
4,319,138	+				-2.2
4,319,138	+				-3.4
4,319,138	+				-2.0
4,319,138	+				-2.4
4,319,138	+				+0.5
4,319,139	-				+0.6
4,319,139	-				-0.2
4,319,139	-				-2.2
4,319,139	-				+0.1
4,319,139	-				+1.0
4,319,139	-				-1.4
4,319,139	-				-0.2
4,319,139	-				-2.1
4,319,139	-				-0.8
4,319,139	-				-2.1
4,319,139	-				+0.3
4,319,139	-				-2.6
4,319,139	-				-2.1
4,319,139	-				-0.4
4,319,139	-				-3.0
4,319,139	-				-1.3
4,319,139	-				+0.6
4,319,139	-				+0.0
4,319,139	-				-2.5
4,319,139	-				-3.1
4,319,139	-				-1.4
4,319,169	+		Psyr_3637	0.10	-0.7
4,319,219	+		Psyr_3637	0.15	-1.9
4,319,302	-		Psyr_3637	0.23	-2.7
4,319,373	+		Psyr_3637	0.30	-2.7
4,319,457	+		Psyr_3637	0.39	+0.9
4,319,457	+		Psyr_3637	0.39	-1.1
4,319,457	+		Psyr_3637	0.39	-2.0
4,319,457	+		Psyr_3637	0.39	-1.1
4,319,458	-		Psyr_3637	0.39	-2.0
4,319,458	-		Psyr_3637	0.39	-2.6
4,319,458	-		Psyr_3637	0.39	-2.5
4,319,517	+		Psyr_3637	0.45	-0.4
4,319,517	+		Psyr_3637	0.45	-2.6
4,319,518	-		Psyr_3637	0.45	-0.4
4,319,518	-		Psyr_3637	0.45	-1.8
4,319,518	-		Psyr_3637	0.45	-0.2
4,319,518	-		Psyr_3637	0.45	-2.8
4,319,554	+		Psyr_3637	0.48	-3.1
4,319,554	+		Psyr_3637	0.48	-1.8
4,319,554	+		Psyr_3637	0.48	+0.2
4,319,554	+		Psyr_3637	0.48	-0.3
4,319,555	-		Psyr_3637	0.48	-2.7
4,319,555	-		Psyr_3637	0.48	-3.1
4,319,558	+		Psyr_3637	0.49	+0.1
4,319,558	+		Psyr_3637	0.49	-2.5
4,319,558	+		Psyr_3637	0.49	-3.1
4,319,558	+		Psyr_3637	0.49	-2.5
4,319,558	+		Psyr_3637	0.49	-3.3
4,319,558	+		Psyr_3637	0.49	-2.6
4,319,559	-		Psyr_3637	0.49	-1.0
4,319,559	-		Psyr_3637	0.49	-2.4
4,319,559	-		Psyr_3637	0.49	-3.4
4,319,559	-		Psyr_3637	0.49	-1.4
4,319,559	-		Psyr_3637	0.49	-0.8
4,319,577	+		Psyr_3637	0.50	-0.5
4,319,577	+		Psyr_3637	0.50	-0.8
4,319,577	+		Psyr_3637	0.50	-1.8
4,319,577	+		Psyr_3637	0.50	-1.7
4,319,578	-		Psyr_3637	0.51	-3.5
4,319,578	-		Psyr_3637	0.51	-3.1
4,319,610	+		Psyr_3637	0.54	-0.5
4,319,611	-		Psyr_3637	0.54	-1.2
4,319,629	+		Psyr_3637	0.56	-3.0
4,319,629	+		Psyr_3637	0.56	+0.9
4,319,629	+		Psyr_3637	0.56	-2.9
4,319,630	-		Psyr_3637	0.56	-2.1
4,319,630	-		Psyr_3637	0.56	-3.2
4,319,630	-		Psyr_3637	0.56	+0.0
4,319,630	-		Psyr_3637	0.56	-3.5
4,319,630	-		Psyr_3637	0.56	-0.8
4,319,631	+		Psyr_3637	0.56	-2.6
4,319,631	+		Psyr_3637	0.56	-1.8
4,319,631	+		Psyr_3637	0.56	-0.9
4,319,631	+		Psyr_3637	0.56	-2.5
4,319,631	+		Psyr_3637	0.56	-2.8
4,319,631	+		Psyr_3637	0.56	-2.8
4,319,631	+		Psyr_3637	0.56	-2.9
4,319,631	+		Psyr_3637	0.56	-4.1
4,319,631	+		Psyr_3637	0.56	-2.4
4,319,631	+		Psyr_3637	0.56	-3.1
4,319,631	+		Psyr_3637	0.56	+0.2
4,319,631	+		Psyr_3637	0.56	-0.2
4,319,632	-		Psyr_3637	0.56	-2.4
4,319,632	-		Psyr_3637	0.56	-3.9
4,319,632	-		Psyr_3637	0.56	-3.7
4,319,632	-		Psyr_3637	0.56	-2.3
4,319,632	-		Psyr_3637	0.56	-1.4
4,319,632	-		Psyr_3637	0.56	-0.7
4,319,632	-		Psyr_3637	0.56	-1.4
4,319,632	-		Psyr_3637	0.56	-1.6
4,319,632	-		Psyr_3637	0.56	-2.7
4,319,632	-		Psyr_3637	0.56	-2.1
4,319,653	+		Psyr_3637	0.58	-2.6
4,319,653	+		Psyr_3637	0.58	-1.3
4,319,654	-		Psyr_3637	0.58	-1.8
4,319,654	-		Psyr_3637	0.58	-1.6
4,319,654	-		Psyr_3637	0.58	-2.0
4,319,654	-		Psyr_3637	0.58	-0.8