Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2836

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
3,409,200	-		Psyr_2834	0.31	-3.4
3,409,200	-		Psyr_2834	0.31	+0.5
3,409,207	-		Psyr_2834	0.33	-0.7
3,409,207	-		Psyr_2834	0.33	+1.2
3,409,207	-		Psyr_2834	0.33	+1.7
3,409,207	-		Psyr_2834	0.33	-0.0
3,409,216	+		Psyr_2834	0.35	+0.5
3,409,217	-		Psyr_2834	0.35	+0.4
3,409,226	+		Psyr_2834	0.37	+0.2
3,409,226	+		Psyr_2834	0.37	-0.5
3,409,226	+		Psyr_2834	0.37	-1.5
3,409,226	+		Psyr_2834	0.37	+0.8
3,409,226	+		Psyr_2834	0.37	-0.8
3,409,226	+		Psyr_2834	0.37	+0.2
3,409,226	+		Psyr_2834	0.37	+0.3
3,409,226	+		Psyr_2834	0.37	-1.0
3,409,226	+		Psyr_2834	0.37	-0.9
3,409,226	+		Psyr_2834	0.37	+1.4
3,409,227	-		Psyr_2834	0.37	+0.7
3,409,227	-		Psyr_2834	0.37	+0.0
3,409,227	-		Psyr_2834	0.37	+1.2
3,409,227	-		Psyr_2834	0.37	-1.2
3,409,227	-		Psyr_2834	0.37	+0.6
3,409,227	-		Psyr_2834	0.37	-0.0
3,409,227	-		Psyr_2834	0.37	+0.7
3,409,227	-		Psyr_2834	0.37	+0.7
3,409,227	-		Psyr_2834	0.37	-0.3
3,409,227	-		Psyr_2834	0.37	-0.2
3,409,230	+		Psyr_2834	0.38	-2.7
3,409,230	+		Psyr_2834	0.38	-0.0
3,409,231	-		Psyr_2834	0.38	+2.1
3,409,271	+		Psyr_2834	0.47	-0.4
3,409,303	+		Psyr_2834	0.54	+1.4
3,409,311	+		Psyr_2834	0.56	-1.0
3,409,311	+		Psyr_2834	0.56	+0.2
3,409,311	+		Psyr_2834	0.56	+0.5
3,409,312	-		Psyr_2834	0.56	+0.9
3,409,376	+		Psyr_2834	0.71	+0.8
3,409,433	+		Psyr_2834	0.83	-0.3
3,409,433	+		Psyr_2834	0.83	+1.8
3,409,467	+				-1.2
3,409,468	-				-2.0
3,409,502	+				-1.1
3,409,503	-				+1.0
3,409,504	+				+1.2
3,409,577	-				+0.6
3,409,580	-				-0.2
3,409,585	+				-0.8
3,409,586	-				-0.8
3,409,634	+		Psyr_2835	0.15	-1.5
3,409,634	+		Psyr_2835	0.15	+1.8
3,409,634	+		Psyr_2835	0.15	+1.4
3,409,634	+		Psyr_2835	0.15	+1.9
3,409,634	+		Psyr_2835	0.15	+0.1
3,409,634	+		Psyr_2835	0.15	-1.4
3,409,634	+		Psyr_2835	0.15	-1.2
3,409,634	+		Psyr_2835	0.15	-0.1
3,409,634	+		Psyr_2835	0.15	-0.8
3,409,635	-		Psyr_2835	0.15	+0.3
3,409,635	-		Psyr_2835	0.15	+0.1
3,409,635	-		Psyr_2835	0.15	+1.0
3,409,635	-		Psyr_2835	0.15	-2.6
3,409,635	-		Psyr_2835	0.15	+0.0
3,409,749	+		Psyr_2835	0.35	+0.3
3,409,750	-		Psyr_2835	0.35	+2.3
3,409,750	-		Psyr_2835	0.35	+1.0
3,409,750	-		Psyr_2835	0.35	-0.8
3,409,978	+		Psyr_2835	0.73	-2.0
3,409,978	+		Psyr_2835	0.73	+0.7
3,409,978	+		Psyr_2835	0.73	+2.5
3,409,978	+		Psyr_2835	0.73	+1.5
3,409,978	+		Psyr_2835	0.73	-0.8
3,409,978	+		Psyr_2835	0.73	-0.8
3,409,978	+		Psyr_2835	0.73	-0.1
3,409,978	+		Psyr_2835	0.73	+0.1
3,409,978	+		Psyr_2835	0.73	+0.9
3,409,978	+		Psyr_2835	0.73	+0.6
3,409,979	-		Psyr_2835	0.73	+1.3
3,409,979	-		Psyr_2835	0.73	+2.7
3,409,979	-		Psyr_2835	0.73	+0.8
3,409,979	-		Psyr_2835	0.73	+0.8
3,409,979	-		Psyr_2835	0.73	-0.8
3,409,979	-		Psyr_2835	0.73	+0.2
3,409,979	-		Psyr_2835	0.73	+1.6
3,409,979	-		Psyr_2835	0.73	+0.0
3,409,979	-		Psyr_2835	0.73	-0.4
3,409,979	-		Psyr_2835	0.73	+0.4
3,410,044	+		Psyr_2835	0.84	-3.1
3,410,044	+		Psyr_2835	0.84	+1.0
3,410,045	-		Psyr_2835	0.85	-1.2
3,410,122	-				+0.1
3,410,471	+		Psyr_2836	0.54	+0.5
3,410,471	+		Psyr_2836	0.54	-3.0
3,410,471	+		Psyr_2836	0.54	-0.2
3,410,471	+		Psyr_2836	0.54	+1.7
3,410,471	+		Psyr_2836	0.54	+3.0
3,410,472	-		Psyr_2836	0.54	+0.8
3,410,472	-		Psyr_2836	0.54	+0.6
3,410,472	-		Psyr_2836	0.54	+0.6
3,410,510	+		Psyr_2836	0.60	-1.5
3,410,612	-		Psyr_2836	0.76	-0.8
3,410,612	-		Psyr_2836	0.76	-2.0
3,410,651	-		Psyr_2836	0.82	+0.6
3,410,760	-				-0.0
3,410,760	-				+0.5
3,410,785	-				-1.8
3,410,890	+		Psyr_2837	0.13	-1.2
3,410,919	-		Psyr_2837	0.16	-1.8
3,410,997	-		Psyr_2837	0.24	-0.5
3,411,003	-		Psyr_2837	0.25	-0.3
3,411,162	-		Psyr_2837	0.41	-0.7
3,411,197	-		Psyr_2837	0.45	+0.8
3,411,227	+		Psyr_2837	0.48	-1.7
3,411,227	+		Psyr_2837	0.48	+0.2
3,411,227	+		Psyr_2837	0.48	-0.8
3,411,227	+		Psyr_2837	0.48	-0.0
3,411,227	+		Psyr_2837	0.48	+0.5
3,411,227	+		Psyr_2837	0.48	-0.8
3,411,228	-		Psyr_2837	0.48	-3.0
3,411,239	+		Psyr_2837	0.49	+0.2
3,411,239	+		Psyr_2837	0.49	+2.2
3,411,287	+		Psyr_2837	0.54	+1.0
3,411,306	-		Psyr_2837	0.56	-1.0
3,411,307	+		Psyr_2837	0.56	+1.7
3,411,308	-		Psyr_2837	0.56	+0.8
3,411,326	-		Psyr_2837	0.58	+2.1
3,411,349	+		Psyr_2837	0.60	-0.4
3,411,349	+		Psyr_2837	0.60	+1.0
3,411,349	+		Psyr_2837	0.60	+0.4
3,411,349	+		Psyr_2837	0.60	+1.2
3,411,349	+		Psyr_2837	0.60	+0.8
3,411,349	+		Psyr_2837	0.60	+0.2
3,411,349	+		Psyr_2837	0.60	-0.7
3,411,349	+		Psyr_2837	0.60	-3.0
3,411,349	+		Psyr_2837	0.60	+0.4
3,411,350	-		Psyr_2837	0.61	+0.8
3,411,350	-		Psyr_2837	0.61	+0.5
3,411,350	-		Psyr_2837	0.61	-1.5
3,411,350	-		Psyr_2837	0.61	-2.1
3,411,350	-		Psyr_2837	0.61	+2.6
3,411,384	+		Psyr_2837	0.64	-0.5
3,411,384	+		Psyr_2837	0.64	-0.8
3,411,384	+		Psyr_2837	0.64	-0.2
3,411,385	-		Psyr_2837	0.64	+1.2
3,411,385	-		Psyr_2837	0.64	+0.3
3,411,385	-		Psyr_2837	0.64	-2.9
3,411,402	-		Psyr_2837	0.66	+2.0
3,411,437	+		Psyr_2837	0.70	-1.2
3,411,438	-		Psyr_2837	0.70	+0.2
3,411,438	-		Psyr_2837	0.70	-1.6
3,411,438	-		Psyr_2837	0.70	-0.1
3,411,438	-		Psyr_2837	0.70	+0.4
3,411,449	+		Psyr_2837	0.71	+2.2
3,411,450	-		Psyr_2837	0.71	+1.6
3,411,450	-		Psyr_2837	0.71	-1.8
3,411,494	+		Psyr_2837	0.75	+1.7
3,411,495	-		Psyr_2837	0.76	-0.6
3,411,512	+		Psyr_2837	0.77	+1.6
3,411,517	+		Psyr_2837	0.78	+2.2
3,411,521	+		Psyr_2837	0.78	+1.2
3,411,521	+		Psyr_2837	0.78	+0.5
3,411,521	+		Psyr_2837	0.78	-0.3
3,411,522	-		Psyr_2837	0.78	-2.3
3,411,590	+		Psyr_2837	0.85	+0.6
3,411,591	-		Psyr_2837	0.86	-2.9
3,411,616	+		Psyr_2837	0.88	-1.0
3,411,616	+		Psyr_2837	0.88	+1.0
3,411,616	+		Psyr_2837	0.88	+0.5
3,411,743	+				+0.4
3,411,743	+				-1.0
3,411,743	+				-0.3
3,411,744	-				+0.6
3,411,746	+				-0.9