Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1573

Experiment: apoplastic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1571 and Psyr_1572 are separated by 86 nucleotidesPsyr_1572 and Psyr_1573 are separated by 66 nucleotidesPsyr_1573 and Psyr_1574 are separated by 76 nucleotides Psyr_1571: Psyr_1571 - Twin-arginine translocation pathway signal:Copper-resistance protein CopA, at 1,765,724 to 1,767,502 _1571 Psyr_1572: Psyr_1572 - HNH endonuclease, at 1,767,589 to 1,767,963 _1572 Psyr_1573: Psyr_1573 - cyclic nucleotide-binding protein, at 1,768,030 to 1,768,506 _1573 Psyr_1574: Psyr_1574 - oligopeptidase B, Serine peptidase, MEROPS family S09A, at 1,768,583 to 1,770,643 _1574 Position (kb) 1768 1769Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1767.087 kb on + strand, within Psyr_1571at 1767.087 kb on + strand, within Psyr_1571at 1767.088 kb on - strand, within Psyr_1571at 1767.088 kb on - strand, within Psyr_1571at 1767.088 kb on - strand, within Psyr_1571at 1767.088 kb on - strand, within Psyr_1571at 1767.088 kb on - strand, within Psyr_1571at 1767.088 kb on - strand, within Psyr_1571at 1767.088 kb on - strand, within Psyr_1571at 1767.088 kb on - strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strandat 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.354 kb on + strandat 1767.354 kb on + strandat 1767.354 kb on + strandat 1767.354 kb on + strandat 1767.354 kb on + strandat 1767.355 kb on - strandat 1767.355 kb on - strandat 1767.355 kb on - strandat 1767.355 kb on - strandat 1767.355 kb on - strandat 1767.355 kb on - strandat 1767.355 kb on - strandat 1767.355 kb on - strandat 1767.355 kb on - strandat 1767.355 kb on - strandat 1767.355 kb on - strandat 1767.355 kb on - strandat 1767.511 kb on - strandat 1767.591 kb on - strandat 1767.591 kb on - strandat 1767.683 kb on + strand, within Psyr_1572at 1767.683 kb on + strand, within Psyr_1572at 1767.684 kb on - strand, within Psyr_1572at 1767.684 kb on - strand, within Psyr_1572at 1767.725 kb on + strand, within Psyr_1572at 1767.726 kb on - strand, within Psyr_1572at 1767.794 kb on - strand, within Psyr_1572at 1767.794 kb on - strand, within Psyr_1572at 1767.794 kb on - strand, within Psyr_1572at 1767.858 kb on - strand, within Psyr_1572at 1767.858 kb on - strand, within Psyr_1572at 1768.048 kb on + strandat 1768.048 kb on + strandat 1768.048 kb on + strandat 1768.048 kb on + strandat 1768.048 kb on + strandat 1768.049 kb on - strandat 1768.049 kb on - strandat 1768.049 kb on - strandat 1768.049 kb on - strandat 1768.049 kb on - strandat 1768.049 kb on - strandat 1768.171 kb on + strand, within Psyr_1573at 1768.171 kb on + strand, within Psyr_1573at 1768.171 kb on + strand, within Psyr_1573at 1768.195 kb on - strand, within Psyr_1573at 1768.195 kb on - strand, within Psyr_1573at 1768.408 kb on + strand, within Psyr_1573at 1768.414 kb on - strand, within Psyr_1573at 1768.509 kb on + strandat 1768.509 kb on + strandat 1768.509 kb on + strandat 1768.509 kb on + strandat 1768.509 kb on + strandat 1768.510 kb on - strandat 1768.510 kb on - strandat 1768.510 kb on - strandat 1768.510 kb on - strandat 1768.510 kb on - strandat 1768.510 kb on - strandat 1768.510 kb on - strandat 1768.510 kb on - strandat 1768.510 kb on - strandat 1768.510 kb on - strandat 1768.518 kb on + strandat 1768.556 kb on + strandat 1768.557 kb on - strandat 1768.557 kb on - strandat 1768.557 kb on - strandat 1768.557 kb on - strandat 1768.560 kb on - strandat 1768.560 kb on - strandat 1768.560 kb on - strandat 1768.560 kb on - strandat 1768.560 kb on - strandat 1768.601 kb on + strandat 1768.601 kb on + strandat 1768.613 kb on - strandat 1768.613 kb on - strandat 1768.761 kb on + strandat 1768.761 kb on + strandat 1768.860 kb on + strand, within Psyr_1574at 1768.943 kb on + strand, within Psyr_1574at 1768.943 kb on + strand, within Psyr_1574at 1768.943 kb on + strand, within Psyr_1574at 1768.943 kb on + strand, within Psyr_1574at 1768.943 kb on + strand, within Psyr_1574at 1768.944 kb on - strand, within Psyr_1574at 1768.944 kb on - strand, within Psyr_1574at 1768.944 kb on - strand, within Psyr_1574at 1768.944 kb on - strand, within Psyr_1574at 1768.944 kb on - strand, within Psyr_1574at 1769.284 kb on - strand, within Psyr_1574at 1769.284 kb on - strand, within Psyr_1574at 1769.382 kb on + strand, within Psyr_1574at 1769.382 kb on + strand, within Psyr_1574at 1769.382 kb on + strand, within Psyr_1574at 1769.383 kb on - strand, within Psyr_1574at 1769.383 kb on - strand, within Psyr_1574at 1769.383 kb on - strand, within Psyr_1574at 1769.383 kb on - strand, within Psyr_1574at 1769.383 kb on - strand, within Psyr_1574at 1769.490 kb on + strand, within Psyr_1574

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Lima bean
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1,767,087 + Psyr_1571 0.77 -2.7
1,767,087 + Psyr_1571 0.77 +1.3
1,767,088 - Psyr_1571 0.77 +1.7
1,767,088 - Psyr_1571 0.77 +1.2
1,767,088 - Psyr_1571 0.77 +1.6
1,767,088 - Psyr_1571 0.77 -1.3
1,767,088 - Psyr_1571 0.77 -0.5
1,767,088 - Psyr_1571 0.77 -0.8
1,767,088 - Psyr_1571 0.77 +1.1
1,767,088 - Psyr_1571 0.77 +0.8
1,767,123 + Psyr_1571 0.79 -0.7
1,767,123 + Psyr_1571 0.79 -1.6
1,767,123 + Psyr_1571 0.79 -1.4
1,767,123 + Psyr_1571 0.79 -1.5
1,767,123 + Psyr_1571 0.79 -1.0
1,767,123 + Psyr_1571 0.79 +0.4
1,767,123 + Psyr_1571 0.79 +0.7
1,767,123 + Psyr_1571 0.79 +0.7
1,767,123 + Psyr_1571 0.79 +1.2
1,767,123 + Psyr_1571 0.79 +0.6
1,767,123 + Psyr_1571 0.79 -2.0
1,767,123 + Psyr_1571 0.79 +1.5
1,767,123 + Psyr_1571 0.79 +0.4
1,767,123 + Psyr_1571 0.79 -0.6
1,767,123 + Psyr_1571 0.79 -0.7
1,767,123 + Psyr_1571 0.79 +0.4
1,767,123 + Psyr_1571 0.79 -2.2
1,767,123 + Psyr_1571 0.79 -0.1
1,767,123 + Psyr_1571 0.79 -0.7
1,767,123 + Psyr_1571 0.79 -0.2
1,767,123 + Psyr_1571 0.79 +1.6
1,767,123 + Psyr_1571 0.79 -0.5
1,767,123 + Psyr_1571 0.79 -0.4
1,767,123 + Psyr_1571 0.79 -1.7
1,767,123 + Psyr_1571 0.79 +0.7
1,767,123 + Psyr_1571 0.79 +0.5
1,767,123 + Psyr_1571 0.79 +0.3
1,767,123 + Psyr_1571 0.79 -0.3
1,767,123 + Psyr_1571 0.79 -0.0
1,767,123 + Psyr_1571 0.79 +1.4
1,767,123 + Psyr_1571 0.79 -1.6
1,767,123 + Psyr_1571 0.79 +0.6
1,767,123 + Psyr_1571 0.79 +0.4
1,767,123 + Psyr_1571 0.79 -1.8
1,767,123 + Psyr_1571 0.79 -0.8
1,767,123 + Psyr_1571 0.79 -0.1
1,767,123 + Psyr_1571 0.79 -2.5
1,767,124 - Psyr_1571 0.79 +0.1
1,767,124 - Psyr_1571 0.79 +0.9
1,767,124 - Psyr_1571 0.79 +0.9
1,767,124 - Psyr_1571 0.79 -1.5
1,767,124 - Psyr_1571 0.79 +0.5
1,767,124 - Psyr_1571 0.79 +0.3
1,767,124 - Psyr_1571 0.79 -1.8
1,767,124 - Psyr_1571 0.79 +1.1
1,767,124 - Psyr_1571 0.79 -0.8
1,767,124 - Psyr_1571 0.79 -0.3
1,767,124 - Psyr_1571 0.79 +1.1
1,767,124 - Psyr_1571 0.79 -0.4
1,767,124 - Psyr_1571 0.79 -0.3
1,767,124 - Psyr_1571 0.79 -1.4
1,767,124 - -0.7
1,767,124 - Psyr_1571 0.79 +0.7
1,767,124 - Psyr_1571 0.79 -0.6
1,767,124 - Psyr_1571 0.79 -2.4
1,767,124 - Psyr_1571 0.79 +1.1
1,767,124 - Psyr_1571 0.79 +1.2
1,767,124 - Psyr_1571 0.79 +0.7
1,767,124 - Psyr_1571 0.79 -0.4
1,767,124 - Psyr_1571 0.79 -2.1
1,767,124 - Psyr_1571 0.79 +1.2
1,767,124 - Psyr_1571 0.79 -0.8
1,767,124 - Psyr_1571 0.79 +1.2
1,767,124 - Psyr_1571 0.79 +0.4
1,767,124 - Psyr_1571 0.79 +1.5
1,767,124 - Psyr_1571 0.79 -1.8
1,767,124 - Psyr_1571 0.79 +0.6
1,767,124 - Psyr_1571 0.79 -1.1
1,767,124 - Psyr_1571 0.79 -0.8
1,767,124 - Psyr_1571 0.79 +0.3
1,767,124 - Psyr_1571 0.79 +0.2
1,767,124 - Psyr_1571 0.79 +0.8
1,767,124 - Psyr_1571 0.79 -0.2
1,767,124 - Psyr_1571 0.79 +1.1
1,767,124 - Psyr_1571 0.79 -2.6
1,767,124 - Psyr_1571 0.79 -1.6
1,767,124 - Psyr_1571 0.79 +2.4
1,767,124 - Psyr_1571 0.79 -1.6
1,767,124 - Psyr_1571 0.79 -0.9
1,767,124 - Psyr_1571 0.79 +0.5
1,767,124 - Psyr_1571 0.79 +3.0
1,767,124 - Psyr_1571 0.79 -1.3
1,767,124 - Psyr_1571 0.79 +0.3
1,767,354 + +0.5
1,767,354 + +0.4
1,767,354 + +1.7
1,767,354 + -0.2
1,767,354 + +1.4
1,767,355 - +1.2
1,767,355 - -0.3
1,767,355 - +1.3
1,767,355 - -0.4
1,767,355 - -0.3
1,767,355 - -1.4
1,767,355 - +0.3
1,767,355 - -1.1
1,767,355 - +0.8
1,767,355 - +2.3
1,767,355 - -0.8
1,767,355 - +1.6
1,767,511 - +1.3
1,767,591 - +1.5
1,767,591 - +1.2
1,767,683 + Psyr_1572 0.25 +0.1
1,767,683 + Psyr_1572 0.25 +0.6
1,767,684 - Psyr_1572 0.25 -0.8
1,767,684 - Psyr_1572 0.25 +0.7
1,767,725 + Psyr_1572 0.36 +0.7
1,767,726 - Psyr_1572 0.37 +2.3
1,767,794 - Psyr_1572 0.55 -0.9
1,767,794 - Psyr_1572 0.55 -0.2
1,767,794 - Psyr_1572 0.55 -0.7
1,767,858 - Psyr_1572 0.72 -0.5
1,767,858 - Psyr_1572 0.72 -0.1
1,768,048 + +0.4
1,768,048 + +0.1
1,768,048 + -1.4
1,768,048 + -0.4
1,768,048 + +0.8
1,768,049 - -0.4
1,768,049 - +3.7
1,768,049 - +1.4
1,768,049 - -1.1
1,768,049 - -0.2
1,768,049 - +1.1
1,768,171 + Psyr_1573 0.30 -0.5
1,768,171 + Psyr_1573 0.30 -1.0
1,768,171 + Psyr_1573 0.30 -1.7
1,768,195 - Psyr_1573 0.35 -0.8
1,768,195 - Psyr_1573 0.35 +0.2
1,768,408 + Psyr_1573 0.79 +0.4
1,768,414 - Psyr_1573 0.81 -2.0
1,768,509 + -0.7
1,768,509 + +0.2
1,768,509 + +0.7
1,768,509 + +0.1
1,768,509 + +1.3
1,768,510 - -0.1
1,768,510 - -1.4
1,768,510 - +0.6
1,768,510 - +0.0
1,768,510 - -0.5
1,768,510 - +2.1
1,768,510 - -2.6
1,768,510 - +0.4
1,768,510 - +0.7
1,768,510 - -1.1
1,768,518 + +0.6
1,768,556 + +0.0
1,768,557 - +0.4
1,768,557 - +1.1
1,768,557 - -2.4
1,768,557 - -0.5
1,768,560 - +1.6
1,768,560 - +0.9
1,768,560 - +0.2
1,768,560 - +1.7
1,768,560 - -0.1
1,768,601 + +2.3
1,768,601 + +0.0
1,768,613 - +1.0
1,768,613 - +1.4
1,768,761 + -0.2
1,768,761 + -0.6
1,768,860 + Psyr_1574 0.13 +0.3
1,768,943 + Psyr_1574 0.17 +0.7
1,768,943 + Psyr_1574 0.17 -2.0
1,768,943 + Psyr_1574 0.17 +0.0
1,768,943 + Psyr_1574 0.17 +0.1
1,768,943 + Psyr_1574 0.17 +1.0
1,768,944 - Psyr_1574 0.18 +0.9
1,768,944 - Psyr_1574 0.18 -1.4
1,768,944 - Psyr_1574 0.18 -2.6
1,768,944 - Psyr_1574 0.18 -2.5
1,768,944 - Psyr_1574 0.18 +1.6
1,769,284 - Psyr_1574 0.34 -2.0
1,769,284 - Psyr_1574 0.34 +0.3
1,769,382 + Psyr_1574 0.39 +1.2
1,769,382 + Psyr_1574 0.39 +1.6
1,769,382 + Psyr_1574 0.39 +0.7
1,769,383 - Psyr_1574 0.39 -0.7
1,769,383 - Psyr_1574 0.39 -0.1
1,769,383 - Psyr_1574 0.39 +0.8
1,769,383 - Psyr_1574 0.39 -2.2
1,769,383 - Psyr_1574 0.39 +2.1
1,769,490 + Psyr_1574 0.44 +0.3

Or see this region's nucleotide sequence