Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1206

Experiment: apoplastic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1205 and Psyr_1206 overlap by 4 nucleotidesPsyr_1206 and Psyr_1207 are separated by 0 nucleotidesPsyr_1207 and Psyr_1208 are separated by 7 nucleotidesPsyr_1208 and Psyr_1209 overlap by 4 nucleotides Psyr_1205: Psyr_1205 - type III secretion protein HrcU, at 1,364,133 to 1,365,212 _1205 Psyr_1206: Psyr_1206 - type III secretion protein HrcT, at 1,365,209 to 1,366,003 _1206 Psyr_1207: Psyr_1207 - type III secretion protein HrcS, at 1,366,004 to 1,366,270 _1207 Psyr_1208: Psyr_1208 - type III secretion protein HrcR, at 1,366,278 to 1,366,931 _1208 Psyr_1209: Psyr_1209 - type III secretion protein HrcQb, at 1,366,928 to 1,367,326 _1209 Position (kb) 1365 1366 1367Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1364.235 kb on - strandat 1364.236 kb on + strandat 1364.236 kb on + strandat 1364.236 kb on + strandat 1364.236 kb on + strandat 1364.236 kb on + strandat 1364.237 kb on - strandat 1364.237 kb on - strandat 1364.237 kb on - strandat 1364.237 kb on - strandat 1364.237 kb on - strandat 1364.392 kb on + strand, within Psyr_1205at 1364.392 kb on + strand, within Psyr_1205at 1364.393 kb on - strand, within Psyr_1205at 1364.393 kb on - strand, within Psyr_1205at 1364.393 kb on - strand, within Psyr_1205at 1364.393 kb on - strand, within Psyr_1205at 1364.393 kb on - strand, within Psyr_1205at 1364.393 kb on - strand, within Psyr_1205at 1364.408 kb on - strand, within Psyr_1205at 1364.542 kb on + strand, within Psyr_1205at 1364.543 kb on - strand, within Psyr_1205at 1364.543 kb on - strand, within Psyr_1205at 1364.543 kb on - strand, within Psyr_1205at 1364.593 kb on + strand, within Psyr_1205at 1364.593 kb on + strand, within Psyr_1205at 1364.593 kb on + strand, within Psyr_1205at 1364.594 kb on - strand, within Psyr_1205at 1364.594 kb on - strand, within Psyr_1205at 1364.594 kb on - strand, within Psyr_1205at 1364.657 kb on + strand, within Psyr_1205at 1364.657 kb on + strand, within Psyr_1205at 1364.657 kb on + strand, within Psyr_1205at 1364.657 kb on + strand, within Psyr_1205at 1364.658 kb on - strand, within Psyr_1205at 1364.658 kb on - strand, within Psyr_1205at 1364.689 kb on + strand, within Psyr_1205at 1364.690 kb on - strand, within Psyr_1205at 1364.690 kb on - strand, within Psyr_1205at 1364.752 kb on + strand, within Psyr_1205at 1364.752 kb on + strand, within Psyr_1205at 1364.752 kb on + strand, within Psyr_1205at 1364.752 kb on + strand, within Psyr_1205at 1364.752 kb on + strand, within Psyr_1205at 1364.752 kb on + strand, within Psyr_1205at 1364.752 kb on + strand, within Psyr_1205at 1364.752 kb on + strand, within Psyr_1205at 1364.752 kb on + strand, within Psyr_1205at 1364.753 kb on - strand, within Psyr_1205at 1364.753 kb on - strand, within Psyr_1205at 1364.753 kb on - strand, within Psyr_1205at 1364.753 kb on - strand, within Psyr_1205at 1364.753 kb on - strand, within Psyr_1205at 1364.753 kb on - strand, within Psyr_1205at 1364.937 kb on + strand, within Psyr_1205at 1364.938 kb on - strand, within Psyr_1205at 1364.958 kb on - strand, within Psyr_1205at 1364.958 kb on - strand, within Psyr_1205at 1364.958 kb on - strand, within Psyr_1205at 1364.958 kb on - strand, within Psyr_1205at 1365.300 kb on + strand, within Psyr_1206at 1365.301 kb on - strand, within Psyr_1206at 1365.301 kb on - strand, within Psyr_1206at 1365.301 kb on - strand, within Psyr_1206at 1365.301 kb on - strand, within Psyr_1206at 1365.301 kb on - strand, within Psyr_1206at 1365.329 kb on - strand, within Psyr_1206at 1365.375 kb on + strand, within Psyr_1206at 1365.439 kb on - strand, within Psyr_1206at 1365.540 kb on + strand, within Psyr_1206at 1365.540 kb on + strand, within Psyr_1206at 1365.540 kb on + strand, within Psyr_1206at 1365.540 kb on + strand, within Psyr_1206at 1365.540 kb on + strand, within Psyr_1206at 1365.541 kb on - strand, within Psyr_1206at 1365.541 kb on - strand, within Psyr_1206at 1365.541 kb on - strand, within Psyr_1206at 1365.591 kb on - strand, within Psyr_1206at 1365.735 kb on + strand, within Psyr_1206at 1365.736 kb on - strand, within Psyr_1206at 1365.736 kb on - strand, within Psyr_1206at 1365.877 kb on - strand, within Psyr_1206at 1366.005 kb on + strandat 1366.005 kb on + strandat 1366.006 kb on - strandat 1366.006 kb on - strandat 1366.006 kb on - strandat 1366.006 kb on - strandat 1366.046 kb on - strand, within Psyr_1207at 1366.285 kb on + strandat 1366.285 kb on + strandat 1366.285 kb on + strandat 1366.285 kb on + strandat 1366.285 kb on + strandat 1366.285 kb on + strandat 1366.286 kb on - strandat 1366.286 kb on - strandat 1366.286 kb on - strandat 1366.286 kb on - strandat 1366.291 kb on + strandat 1366.292 kb on - strandat 1366.292 kb on - strandat 1366.292 kb on - strandat 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.565 kb on + strandat 1366.707 kb on + strand, within Psyr_1208at 1366.707 kb on + strand, within Psyr_1208at 1366.707 kb on + strand, within Psyr_1208at 1366.707 kb on + strand, within Psyr_1208at 1366.708 kb on - strand, within Psyr_1208at 1366.708 kb on - strand, within Psyr_1208at 1366.708 kb on - strand, within Psyr_1208at 1366.708 kb on - strand, within Psyr_1208at 1366.708 kb on - strand, within Psyr_1208at 1366.708 kb on - strand, within Psyr_1208at 1366.708 kb on - strand, within Psyr_1208at 1366.708 kb on - strand, within Psyr_1208at 1366.708 kb on - strand, within Psyr_1208at 1366.708 kb on - strand, within Psyr_1208at 1366.762 kb on + strand, within Psyr_1208at 1366.762 kb on + strand, within Psyr_1208at 1366.762 kb on + strand, within Psyr_1208at 1366.762 kb on + strand, within Psyr_1208at 1366.762 kb on + strand, within Psyr_1208at 1366.763 kb on - strand, within Psyr_1208at 1366.763 kb on - strand, within Psyr_1208at 1366.763 kb on - strand, within Psyr_1208at 1366.763 kb on - strand, within Psyr_1208

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Lima bean
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1,364,235 - -2.2
1,364,236 + -1.7
1,364,236 + -2.5
1,364,236 + +1.2
1,364,236 + -2.2
1,364,236 + -2.6
1,364,237 - -2.1
1,364,237 - -2.2
1,364,237 - -1.4
1,364,237 - -2.2
1,364,237 - -2.0
1,364,392 + Psyr_1205 0.24 -2.2
1,364,392 + Psyr_1205 0.24 -2.4
1,364,393 - Psyr_1205 0.24 -1.3
1,364,393 - Psyr_1205 0.24 -2.3
1,364,393 - Psyr_1205 0.24 +0.9
1,364,393 - Psyr_1205 0.24 -0.2
1,364,393 - Psyr_1205 0.24 -2.3
1,364,393 - Psyr_1205 0.24 -1.6
1,364,408 - Psyr_1205 0.25 -3.0
1,364,542 + Psyr_1205 0.38 -2.6
1,364,543 - Psyr_1205 0.38 -4.1
1,364,543 - Psyr_1205 0.38 -3.1
1,364,543 - Psyr_1205 0.38 -1.8
1,364,593 + Psyr_1205 0.43 -0.2
1,364,593 + Psyr_1205 0.43 +0.4
1,364,593 + Psyr_1205 0.43 -2.2
1,364,594 - Psyr_1205 0.43 -1.3
1,364,594 - Psyr_1205 0.43 -2.3
1,364,594 - Psyr_1205 0.43 -3.9
1,364,657 + Psyr_1205 0.49 -2.6
1,364,657 + Psyr_1205 0.49 -2.5
1,364,657 + Psyr_1205 0.49 -2.9
1,364,657 + Psyr_1205 0.49 -2.7
1,364,658 - Psyr_1205 0.49 -2.3
1,364,658 - Psyr_1205 0.49 -3.3
1,364,689 + Psyr_1205 0.51 -2.0
1,364,690 - Psyr_1205 0.52 -4.1
1,364,690 - Psyr_1205 0.52 -2.2
1,364,752 + Psyr_1205 0.57 -1.0
1,364,752 + Psyr_1205 0.57 -3.2
1,364,752 + Psyr_1205 0.57 -3.5
1,364,752 + Psyr_1205 0.57 -1.8
1,364,752 + Psyr_1205 0.57 -2.9
1,364,752 + Psyr_1205 0.57 -3.9
1,364,752 + Psyr_1205 0.57 -0.5
1,364,752 + Psyr_1205 0.57 -3.2
1,364,752 + Psyr_1205 0.57 +0.4
1,364,753 - Psyr_1205 0.57 -0.9
1,364,753 - Psyr_1205 0.57 -3.4
1,364,753 - Psyr_1205 0.57 -1.0
1,364,753 - Psyr_1205 0.57 -1.8
1,364,753 - Psyr_1205 0.57 -2.7
1,364,753 - Psyr_1205 0.57 -0.5
1,364,937 + Psyr_1205 0.74 -3.2
1,364,938 - Psyr_1205 0.75 -2.2
1,364,958 - Psyr_1205 0.76 -4.4
1,364,958 - Psyr_1205 0.76 -2.3
1,364,958 - Psyr_1205 0.76 -2.4
1,364,958 - Psyr_1205 0.76 -3.5
1,365,300 + Psyr_1206 0.11 -2.5
1,365,301 - Psyr_1206 0.12 -0.6
1,365,301 - Psyr_1206 0.12 -1.0
1,365,301 - Psyr_1206 0.12 +2.6
1,365,301 - Psyr_1206 0.12 -2.2
1,365,301 - Psyr_1206 0.12 -1.6
1,365,329 - Psyr_1206 0.15 -2.8
1,365,375 + Psyr_1206 0.21 -1.6
1,365,439 - Psyr_1206 0.29 -2.9
1,365,540 + Psyr_1206 0.42 -1.8
1,365,540 + Psyr_1206 0.42 -2.9
1,365,540 + Psyr_1206 0.42 -3.2
1,365,540 + Psyr_1206 0.42 -1.6
1,365,540 + Psyr_1206 0.42 -1.5
1,365,541 - Psyr_1206 0.42 -2.9
1,365,541 - Psyr_1206 0.42 -3.9
1,365,541 - Psyr_1206 0.42 -3.9
1,365,591 - Psyr_1206 0.48 -1.6
1,365,735 + Psyr_1206 0.66 -2.7
1,365,736 - Psyr_1206 0.66 -3.5
1,365,736 - Psyr_1206 0.66 -4.5
1,365,877 - Psyr_1206 0.84 -2.5
1,366,005 + -0.4
1,366,005 + -1.3
1,366,006 - -1.6
1,366,006 - -1.0
1,366,006 - -1.6
1,366,006 - -3.0
1,366,046 - Psyr_1207 0.16 -2.1
1,366,285 + -2.0
1,366,285 + -2.3
1,366,285 + -2.5
1,366,285 + -4.4
1,366,285 + -2.2
1,366,285 + -4.0
1,366,286 - -0.6
1,366,286 - +1.3
1,366,286 - -2.6
1,366,286 - -4.0
1,366,291 + -2.1
1,366,292 - -0.6
1,366,292 - -2.7
1,366,292 - -3.6
1,366,444 + Psyr_1208 0.25 -3.9
1,366,444 + Psyr_1208 0.25 -1.5
1,366,444 + Psyr_1208 0.25 -2.3
1,366,444 + Psyr_1208 0.25 -2.5
1,366,444 + Psyr_1208 0.25 -3.6
1,366,444 + Psyr_1208 0.25 -2.9
1,366,444 + Psyr_1208 0.25 -1.8
1,366,444 + Psyr_1208 0.25 -2.5
1,366,444 + Psyr_1208 0.25 -2.5
1,366,444 + Psyr_1208 0.25 -4.7
1,366,444 + Psyr_1208 0.25 -3.8
1,366,444 + Psyr_1208 0.25 -1.7
1,366,444 + Psyr_1208 0.25 -4.3
1,366,444 + Psyr_1208 0.25 -2.0
1,366,444 + Psyr_1208 0.25 -2.6
1,366,444 + Psyr_1208 0.25 -2.6
1,366,444 + Psyr_1208 0.25 -3.6
1,366,444 + Psyr_1208 0.25 -2.0
1,366,444 + Psyr_1208 0.25 -1.2
1,366,444 + Psyr_1208 0.25 -0.6
1,366,444 + Psyr_1208 0.25 +0.4
1,366,444 + Psyr_1208 0.25 -4.5
1,366,444 + Psyr_1208 0.25 -2.1
1,366,444 + Psyr_1208 0.25 -4.4
1,366,444 + Psyr_1208 0.25 -0.6
1,366,444 + Psyr_1208 0.25 -0.1
1,366,444 + Psyr_1208 0.25 +0.7
1,366,444 + Psyr_1208 0.25 -1.5
1,366,444 + Psyr_1208 0.25 -3.0
1,366,444 + Psyr_1208 0.25 -0.6
1,366,445 - Psyr_1208 0.26 -2.9
1,366,445 - Psyr_1208 0.26 -2.3
1,366,445 - Psyr_1208 0.26 -1.7
1,366,445 - Psyr_1208 0.26 -2.6
1,366,445 - Psyr_1208 0.26 -2.7
1,366,445 - Psyr_1208 0.26 -4.1
1,366,445 - Psyr_1208 0.26 -1.5
1,366,445 - Psyr_1208 0.26 -1.0
1,366,445 - Psyr_1208 0.26 -2.8
1,366,445 - Psyr_1208 0.26 -0.0
1,366,445 - Psyr_1208 0.26 -0.2
1,366,445 - Psyr_1208 0.26 -1.0
1,366,445 - Psyr_1208 0.26 +0.1
1,366,445 - Psyr_1208 0.26 +0.4
1,366,445 - Psyr_1208 0.26 -3.6
1,366,445 - Psyr_1208 0.26 -2.0
1,366,445 - Psyr_1208 0.26 -0.7
1,366,445 - Psyr_1208 0.26 -3.5
1,366,445 - Psyr_1208 0.26 -2.3
1,366,445 - Psyr_1208 0.26 -1.1
1,366,445 - Psyr_1208 0.26 -3.5
1,366,445 - Psyr_1208 0.26 -1.0
1,366,445 - Psyr_1208 0.26 +0.1
1,366,445 - Psyr_1208 0.26 +0.6
1,366,565 + +0.4
1,366,707 + Psyr_1208 0.66 -2.1
1,366,707 + Psyr_1208 0.66 -1.1
1,366,707 + Psyr_1208 0.66 -3.7
1,366,707 + Psyr_1208 0.66 -4.3
1,366,708 - Psyr_1208 0.66 -0.2
1,366,708 - Psyr_1208 0.66 -2.9
1,366,708 - Psyr_1208 0.66 -3.2
1,366,708 - Psyr_1208 0.66 -2.7
1,366,708 - Psyr_1208 0.66 -2.3
1,366,708 - Psyr_1208 0.66 -1.2
1,366,708 - Psyr_1208 0.66 -4.7
1,366,708 - Psyr_1208 0.66 -1.5
1,366,708 - Psyr_1208 0.66 -2.3
1,366,708 - Psyr_1208 0.66 -3.2
1,366,762 + Psyr_1208 0.74 -0.9
1,366,762 + Psyr_1208 0.74 -0.2
1,366,762 + Psyr_1208 0.74 -1.1
1,366,762 + Psyr_1208 0.74 -1.2
1,366,762 + Psyr_1208 0.74 -2.9
1,366,763 - Psyr_1208 0.74 +0.5
1,366,763 - Psyr_1208 0.74 -2.1
1,366,763 - Psyr_1208 0.74 -2.6
1,366,763 - Psyr_1208 0.74 -1.2

Or see this region's nucleotide sequence