Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1075

Experiment: apoplastic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1074 and Psyr_1075 are separated by 10 nucleotidesPsyr_1075 and Psyr_1076 are separated by 153 nucleotides Psyr_1074: Psyr_1074 - amino acid ABC transporter membrane protein 2, PAAT family, at 1,217,239 to 1,218,336 _1074 Psyr_1075: Psyr_1075 - amino acid ABC transporter ATP-binding protein, PAAT family, at 1,218,347 to 1,219,111 _1075 Psyr_1076: Psyr_1076 - Cyanate transport system protein, at 1,219,265 to 1,220,509 _1076 Position (kb) 1218 1219 1220Strain fitness (log2 ratio) -2 -1 0 1 2at 1217.362 kb on + strand, within Psyr_1074at 1217.362 kb on + strand, within Psyr_1074at 1217.362 kb on + strand, within Psyr_1074at 1217.371 kb on + strand, within Psyr_1074at 1217.371 kb on + strand, within Psyr_1074at 1217.371 kb on + strand, within Psyr_1074at 1217.372 kb on - strand, within Psyr_1074at 1217.372 kb on - strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.500 kb on + strand, within Psyr_1074at 1217.501 kb on - strand, within Psyr_1074at 1217.501 kb on - strand, within Psyr_1074at 1217.501 kb on - strand, within Psyr_1074at 1217.501 kb on - strand, within Psyr_1074at 1217.506 kb on + strand, within Psyr_1074at 1217.506 kb on + strand, within Psyr_1074at 1217.506 kb on + strand, within Psyr_1074at 1217.506 kb on + strand, within Psyr_1074at 1217.506 kb on + strand, within Psyr_1074at 1217.507 kb on - strand, within Psyr_1074at 1217.507 kb on - strand, within Psyr_1074at 1217.507 kb on - strand, within Psyr_1074at 1217.507 kb on - strand, within Psyr_1074at 1217.650 kb on + strand, within Psyr_1074at 1217.688 kb on - strand, within Psyr_1074at 1217.968 kb on + strand, within Psyr_1074at 1217.968 kb on + strand, within Psyr_1074at 1217.969 kb on - strand, within Psyr_1074at 1217.969 kb on - strand, within Psyr_1074at 1217.969 kb on - strand, within Psyr_1074at 1218.238 kb on + strandat 1218.239 kb on - strandat 1218.239 kb on - strandat 1218.280 kb on - strandat 1218.309 kb on + strandat 1218.309 kb on + strandat 1218.309 kb on + strandat 1218.309 kb on + strandat 1218.309 kb on + strandat 1218.310 kb on - strandat 1218.310 kb on - strandat 1218.310 kb on - strandat 1218.310 kb on - strandat 1218.310 kb on - strandat 1218.310 kb on - strandat 1218.310 kb on - strandat 1218.358 kb on + strandat 1218.358 kb on + strandat 1218.364 kb on + strandat 1218.364 kb on + strandat 1218.406 kb on - strandat 1218.406 kb on - strandat 1218.417 kb on - strandat 1218.432 kb on + strand, within Psyr_1075at 1218.432 kb on + strand, within Psyr_1075at 1218.432 kb on + strand, within Psyr_1075at 1218.432 kb on + strand, within Psyr_1075at 1218.433 kb on - strand, within Psyr_1075at 1218.433 kb on - strand, within Psyr_1075at 1218.433 kb on - strand, within Psyr_1075at 1218.433 kb on - strand, within Psyr_1075at 1218.472 kb on + strand, within Psyr_1075at 1218.473 kb on - strand, within Psyr_1075at 1218.744 kb on - strand, within Psyr_1075at 1218.744 kb on - strand, within Psyr_1075at 1219.079 kb on - strandat 1219.161 kb on - strandat 1219.186 kb on + strandat 1219.186 kb on + strandat 1219.186 kb on + strandat 1219.186 kb on + strandat 1219.186 kb on + strandat 1219.186 kb on + strandat 1219.186 kb on + strandat 1219.186 kb on + strandat 1219.187 kb on - strandat 1219.187 kb on - strandat 1219.187 kb on - strandat 1219.187 kb on - strandat 1219.208 kb on + strandat 1219.208 kb on + strandat 1219.208 kb on + strandat 1219.208 kb on + strandat 1219.209 kb on - strandat 1219.209 kb on - strandat 1219.259 kb on + strandat 1219.259 kb on + strandat 1219.259 kb on + strandat 1219.259 kb on + strandat 1219.259 kb on + strandat 1219.259 kb on + strandat 1219.260 kb on - strandat 1219.260 kb on - strandat 1219.260 kb on - strandat 1219.260 kb on - strandat 1219.733 kb on + strand, within Psyr_1076at 1219.733 kb on + strand, within Psyr_1076at 1219.733 kb on + strand, within Psyr_1076at 1219.734 kb on - strand, within Psyr_1076at 1219.796 kb on + strand, within Psyr_1076at 1219.796 kb on + strand, within Psyr_1076at 1219.796 kb on + strand, within Psyr_1076at 1219.961 kb on + strand, within Psyr_1076at 1219.961 kb on + strand, within Psyr_1076at 1219.961 kb on + strand, within Psyr_1076at 1219.961 kb on + strand, within Psyr_1076at 1219.961 kb on + strand, within Psyr_1076at 1219.961 kb on + strand, within Psyr_1076at 1219.961 kb on + strand, within Psyr_1076at 1219.961 kb on + strand, within Psyr_1076at 1219.961 kb on + strand, within Psyr_1076at 1219.962 kb on - strand, within Psyr_1076at 1219.962 kb on - strand, within Psyr_1076at 1219.962 kb on - strand, within Psyr_1076at 1219.962 kb on - strand, within Psyr_1076at 1219.962 kb on - strand, within Psyr_1076at 1219.962 kb on - strand, within Psyr_1076at 1219.962 kb on - strand, within Psyr_1076at 1219.988 kb on + strand, within Psyr_1076at 1219.989 kb on - strand, within Psyr_1076at 1219.989 kb on - strand, within Psyr_1076at 1219.989 kb on - strand, within Psyr_1076at 1219.989 kb on - strand, within Psyr_1076at 1220.108 kb on + strand, within Psyr_1076at 1220.109 kb on - strand, within Psyr_1076

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Lima bean
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1,217,362 + Psyr_1074 0.11 -1.4
1,217,362 + Psyr_1074 0.11 +0.4
1,217,362 + Psyr_1074 0.11 +1.6
1,217,371 + Psyr_1074 0.12 +0.5
1,217,371 + Psyr_1074 0.12 -0.0
1,217,371 + Psyr_1074 0.12 -0.6
1,217,372 - Psyr_1074 0.12 +0.5
1,217,372 - Psyr_1074 0.12 +0.9
1,217,500 + Psyr_1074 0.24 +0.1
1,217,500 + Psyr_1074 0.24 +0.7
1,217,500 + Psyr_1074 0.24 +0.8
1,217,500 + Psyr_1074 0.24 +1.6
1,217,500 + Psyr_1074 0.24 +0.3
1,217,500 + Psyr_1074 0.24 +0.6
1,217,500 + Psyr_1074 0.24 -1.2
1,217,500 + Psyr_1074 0.24 +0.3
1,217,500 + Psyr_1074 0.24 +0.3
1,217,500 + Psyr_1074 0.24 -0.2
1,217,500 + Psyr_1074 0.24 -1.4
1,217,500 + Psyr_1074 0.24 +0.5
1,217,501 - Psyr_1074 0.24 -1.7
1,217,501 - Psyr_1074 0.24 +0.2
1,217,501 - Psyr_1074 0.24 +1.5
1,217,501 - Psyr_1074 0.24 -0.2
1,217,506 + Psyr_1074 0.24 +0.8
1,217,506 + Psyr_1074 0.24 +0.2
1,217,506 + Psyr_1074 0.24 +0.1
1,217,506 + Psyr_1074 0.24 +0.9
1,217,506 + Psyr_1074 0.24 +0.6
1,217,507 - Psyr_1074 0.24 +0.2
1,217,507 - Psyr_1074 0.24 +1.4
1,217,507 - Psyr_1074 0.24 -0.4
1,217,507 - Psyr_1074 0.24 +1.1
1,217,650 + Psyr_1074 0.37 +2.2
1,217,688 - Psyr_1074 0.41 +0.6
1,217,968 + Psyr_1074 0.66 +0.8
1,217,968 + Psyr_1074 0.66 +1.7
1,217,969 - Psyr_1074 0.66 -0.0
1,217,969 - Psyr_1074 0.66 +0.4
1,217,969 - Psyr_1074 0.66 -2.3
1,218,238 + -2.1
1,218,239 - +2.1
1,218,239 - -0.9
1,218,280 - +0.1
1,218,309 + -0.9
1,218,309 + -0.6
1,218,309 + -0.6
1,218,309 + +1.3
1,218,309 + -0.3
1,218,310 - +0.4
1,218,310 - +0.5
1,218,310 - +0.9
1,218,310 - +1.2
1,218,310 - +0.4
1,218,310 - +0.5
1,218,310 - +0.0
1,218,358 + -1.8
1,218,358 + -1.3
1,218,364 + -0.7
1,218,364 + +0.1
1,218,406 - +2.4
1,218,406 - -0.2
1,218,417 - -1.4
1,218,432 + Psyr_1075 0.11 +0.2
1,218,432 + Psyr_1075 0.11 -0.5
1,218,432 + Psyr_1075 0.11 +0.4
1,218,432 + Psyr_1075 0.11 +0.7
1,218,433 - Psyr_1075 0.11 +1.0
1,218,433 - Psyr_1075 0.11 +0.2
1,218,433 - Psyr_1075 0.11 -0.1
1,218,433 - Psyr_1075 0.11 +2.4
1,218,472 + Psyr_1075 0.16 -2.1
1,218,473 - Psyr_1075 0.16 +0.6
1,218,744 - Psyr_1075 0.52 -1.8
1,218,744 - Psyr_1075 0.52 +1.7
1,219,079 - +0.7
1,219,161 - -1.4
1,219,186 + -0.3
1,219,186 + -2.2
1,219,186 + +2.0
1,219,186 + +1.9
1,219,186 + -0.8
1,219,186 + +1.2
1,219,186 + +0.2
1,219,186 + +0.4
1,219,187 - +1.2
1,219,187 - +0.9
1,219,187 - +0.9
1,219,187 - -1.7
1,219,208 + -0.7
1,219,208 + -0.7
1,219,208 + +0.2
1,219,208 + -0.7
1,219,209 - -1.3
1,219,209 - +1.6
1,219,259 + -0.3
1,219,259 + -1.8
1,219,259 + +0.2
1,219,259 + -2.3
1,219,259 + +1.5
1,219,259 + -1.5
1,219,260 - +0.3
1,219,260 - -0.4
1,219,260 - -0.3
1,219,260 - +0.7
1,219,733 + Psyr_1076 0.38 +0.2
1,219,733 + Psyr_1076 0.38 +2.4
1,219,733 + Psyr_1076 0.38 +0.4
1,219,734 - Psyr_1076 0.38 -0.3
1,219,796 + Psyr_1076 0.43 +0.8
1,219,796 + Psyr_1076 0.43 -0.0
1,219,796 + Psyr_1076 0.43 -2.1
1,219,961 + Psyr_1076 0.56 -1.4
1,219,961 + Psyr_1076 0.56 -2.5
1,219,961 + Psyr_1076 0.56 +0.4
1,219,961 + Psyr_1076 0.56 -0.4
1,219,961 + Psyr_1076 0.56 -1.2
1,219,961 + Psyr_1076 0.56 -0.1
1,219,961 + Psyr_1076 0.56 -0.9
1,219,961 + Psyr_1076 0.56 +1.1
1,219,961 + Psyr_1076 0.56 -1.2
1,219,962 - Psyr_1076 0.56 +0.3
1,219,962 - Psyr_1076 0.56 -0.1
1,219,962 - Psyr_1076 0.56 -0.9
1,219,962 - Psyr_1076 0.56 -1.5
1,219,962 - Psyr_1076 0.56 -0.2
1,219,962 - Psyr_1076 0.56 -1.3
1,219,962 - Psyr_1076 0.56 +2.1
1,219,988 + Psyr_1076 0.58 +0.4
1,219,989 - Psyr_1076 0.58 +1.2
1,219,989 - Psyr_1076 0.58 -1.2
1,219,989 - Psyr_1076 0.58 -0.2
1,219,989 - Psyr_1076 0.58 -1.0
1,220,108 + Psyr_1076 0.68 -0.2
1,220,109 - Psyr_1076 0.68 -0.8

Or see this region's nucleotide sequence