Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1062

Experiment: apoplastic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1061 and Psyr_1062 are separated by 40 nucleotidesPsyr_1062 and Psyr_1063 are separated by 100 nucleotides Psyr_1061: Psyr_1061 - alginate biosynthesis protein Alg44, at 1,201,929 to 1,203,101 _1061 Psyr_1062: Psyr_1062 - alginate biosynthesis protein Alg8, at 1,203,142 to 1,204,623 _1062 Psyr_1063: Psyr_1063 - GDP-mannose 6-dehydrogenase, at 1,204,724 to 1,206,040 _1063 Position (kb) 1203 1204 1205Strain fitness (log2 ratio) -3 -2 -1 0 1at 1202.183 kb on - strand, within Psyr_1061at 1202.335 kb on + strand, within Psyr_1061at 1202.336 kb on - strand, within Psyr_1061at 1202.546 kb on - strand, within Psyr_1061at 1202.546 kb on - strand, within Psyr_1061at 1202.546 kb on - strand, within Psyr_1061at 1202.554 kb on + strand, within Psyr_1061at 1202.554 kb on + strand, within Psyr_1061at 1202.555 kb on - strand, within Psyr_1061at 1202.571 kb on - strand, within Psyr_1061at 1202.571 kb on - strand, within Psyr_1061at 1202.982 kb on + strand, within Psyr_1061at 1202.982 kb on + strand, within Psyr_1061at 1202.982 kb on + strand, within Psyr_1061at 1202.983 kb on - strand, within Psyr_1061at 1203.072 kb on + strandat 1203.073 kb on - strandat 1203.073 kb on - strandat 1203.095 kb on + strandat 1203.095 kb on + strandat 1203.095 kb on + strandat 1203.095 kb on + strandat 1203.096 kb on - strandat 1203.096 kb on - strandat 1203.118 kb on + strandat 1203.118 kb on + strandat 1203.118 kb on + strandat 1203.119 kb on - strandat 1203.127 kb on - strandat 1203.251 kb on - strandat 1203.302 kb on + strand, within Psyr_1062at 1203.302 kb on + strand, within Psyr_1062at 1203.302 kb on + strand, within Psyr_1062at 1203.302 kb on + strand, within Psyr_1062at 1203.302 kb on + strand, within Psyr_1062at 1203.302 kb on + strand, within Psyr_1062at 1203.302 kb on + strand, within Psyr_1062at 1203.302 kb on + strand, within Psyr_1062at 1203.302 kb on + strand, within Psyr_1062at 1203.302 kb on + strand, within Psyr_1062at 1203.302 kb on + strand, within Psyr_1062at 1203.302 kb on + strand, within Psyr_1062at 1203.303 kb on - strand, within Psyr_1062at 1203.303 kb on - strand, within Psyr_1062at 1203.303 kb on - strand, within Psyr_1062at 1203.303 kb on - strand, within Psyr_1062at 1203.303 kb on - strand, within Psyr_1062at 1203.303 kb on - strand, within Psyr_1062at 1203.303 kb on - strand, within Psyr_1062at 1203.303 kb on - strand, within Psyr_1062at 1203.303 kb on - strand, within Psyr_1062at 1203.335 kb on + strand, within Psyr_1062at 1203.335 kb on + strand, within Psyr_1062at 1203.335 kb on + strand, within Psyr_1062at 1203.336 kb on - strand, within Psyr_1062at 1203.336 kb on - strand, within Psyr_1062at 1203.336 kb on - strand, within Psyr_1062at 1203.339 kb on - strand, within Psyr_1062at 1203.431 kb on + strand, within Psyr_1062at 1203.431 kb on + strand, within Psyr_1062at 1203.431 kb on + strand, within Psyr_1062at 1203.431 kb on + strand, within Psyr_1062at 1203.431 kb on + strand, within Psyr_1062at 1203.431 kb on + strand, within Psyr_1062at 1203.431 kb on + strand, within Psyr_1062at 1203.431 kb on + strand, within Psyr_1062at 1203.432 kb on - strand, within Psyr_1062at 1203.432 kb on - strand, within Psyr_1062at 1203.432 kb on - strand, within Psyr_1062at 1203.432 kb on - strand, within Psyr_1062at 1203.432 kb on - strand, within Psyr_1062at 1203.455 kb on + strand, within Psyr_1062at 1203.455 kb on + strand, within Psyr_1062at 1203.559 kb on + strand, within Psyr_1062at 1203.559 kb on + strand, within Psyr_1062at 1203.560 kb on - strand, within Psyr_1062at 1203.615 kb on - strand, within Psyr_1062at 1203.692 kb on + strand, within Psyr_1062at 1203.692 kb on + strand, within Psyr_1062at 1203.692 kb on + strand, within Psyr_1062at 1203.693 kb on - strand, within Psyr_1062at 1203.693 kb on - strand, within Psyr_1062at 1203.693 kb on - strand, within Psyr_1062at 1203.693 kb on - strand, within Psyr_1062at 1203.693 kb on - strand, within Psyr_1062at 1203.693 kb on - strand, within Psyr_1062at 1203.693 kb on - strand, within Psyr_1062at 1203.693 kb on - strand, within Psyr_1062at 1203.693 kb on - strand, within Psyr_1062at 1203.693 kb on - strand, within Psyr_1062at 1203.950 kb on + strand, within Psyr_1062at 1203.950 kb on + strand, within Psyr_1062at 1203.950 kb on + strand, within Psyr_1062at 1203.950 kb on + strand, within Psyr_1062at 1203.950 kb on + strand, within Psyr_1062at 1203.951 kb on - strand, within Psyr_1062at 1203.951 kb on - strand, within Psyr_1062at 1204.304 kb on + strand, within Psyr_1062at 1204.304 kb on + strand, within Psyr_1062at 1204.305 kb on - strand, within Psyr_1062at 1204.305 kb on - strand, within Psyr_1062at 1204.424 kb on + strand, within Psyr_1062at 1204.424 kb on + strand, within Psyr_1062at 1204.425 kb on - strand, within Psyr_1062at 1204.425 kb on - strand, within Psyr_1062at 1204.479 kb on + strandat 1204.479 kb on + strandat 1204.501 kb on + strandat 1204.501 kb on + strandat 1204.501 kb on + strandat 1204.503 kb on + strandat 1204.503 kb on + strandat 1204.504 kb on - strandat 1204.504 kb on - strandat 1204.504 kb on - strandat 1204.530 kb on + strandat 1204.530 kb on + strandat 1204.564 kb on + strandat 1204.570 kb on + strandat 1204.571 kb on - strandat 1204.571 kb on - strandat 1204.571 kb on - strandat 1204.571 kb on - strandat 1204.574 kb on + strandat 1204.574 kb on + strandat 1204.574 kb on + strandat 1204.575 kb on - strandat 1204.575 kb on - strandat 1204.575 kb on - strandat 1204.597 kb on + strandat 1204.624 kb on - strandat 1204.630 kb on - strandat 1204.635 kb on + strandat 1204.635 kb on + strandat 1204.726 kb on - strandat 1204.735 kb on + strandat 1204.736 kb on - strandat 1204.736 kb on - strandat 1204.938 kb on + strand, within Psyr_1063at 1204.938 kb on + strand, within Psyr_1063at 1204.938 kb on + strand, within Psyr_1063at 1204.939 kb on - strand, within Psyr_1063at 1204.939 kb on - strand, within Psyr_1063at 1204.939 kb on - strand, within Psyr_1063at 1204.939 kb on - strand, within Psyr_1063at 1204.968 kb on + strand, within Psyr_1063at 1204.968 kb on + strand, within Psyr_1063at 1204.969 kb on - strand, within Psyr_1063at 1204.969 kb on - strand, within Psyr_1063at 1204.969 kb on - strand, within Psyr_1063at 1205.109 kb on + strand, within Psyr_1063at 1205.109 kb on + strand, within Psyr_1063at 1205.110 kb on - strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.272 kb on - strand, within Psyr_1063at 1205.272 kb on - strand, within Psyr_1063at 1205.272 kb on - strand, within Psyr_1063at 1205.272 kb on - strand, within Psyr_1063at 1205.272 kb on - strand, within Psyr_1063at 1205.272 kb on - strand, within Psyr_1063at 1205.272 kb on - strand, within Psyr_1063at 1205.272 kb on - strand, within Psyr_1063at 1205.272 kb on - strand, within Psyr_1063at 1205.272 kb on - strand, within Psyr_1063at 1205.272 kb on - strand, within Psyr_1063at 1205.272 kb on - strand, within Psyr_1063at 1205.274 kb on + strand, within Psyr_1063at 1205.275 kb on - strand, within Psyr_1063at 1205.377 kb on + strand, within Psyr_1063at 1205.377 kb on + strand, within Psyr_1063at 1205.378 kb on - strand, within Psyr_1063at 1205.409 kb on + strand, within Psyr_1063at 1205.410 kb on - strand, within Psyr_1063at 1205.410 kb on - strand, within Psyr_1063at 1205.410 kb on - strand, within Psyr_1063at 1205.410 kb on - strand, within Psyr_1063at 1205.538 kb on + strand, within Psyr_1063at 1205.538 kb on + strand, within Psyr_1063at 1205.538 kb on + strand, within Psyr_1063at 1205.555 kb on - strand, within Psyr_1063at 1205.555 kb on - strand, within Psyr_1063

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Lima bean
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1,202,183 - Psyr_1061 0.22 +0.8
1,202,335 + Psyr_1061 0.35 -1.5
1,202,336 - Psyr_1061 0.35 -2.6
1,202,546 - Psyr_1061 0.53 +0.1
1,202,546 - Psyr_1061 0.53 -3.5
1,202,546 - Psyr_1061 0.53 -2.7
1,202,554 + Psyr_1061 0.53 -3.4
1,202,554 + Psyr_1061 0.53 -0.6
1,202,555 - Psyr_1061 0.53 -0.4
1,202,571 - Psyr_1061 0.55 -1.9
1,202,571 - Psyr_1061 0.55 -1.2
1,202,982 + Psyr_1061 0.90 -1.5
1,202,982 + Psyr_1061 0.90 -0.5
1,202,982 + Psyr_1061 0.90 -1.2
1,202,983 - Psyr_1061 0.90 +0.0
1,203,072 + -0.4
1,203,073 - -0.9
1,203,073 - -1.9
1,203,095 + +1.2
1,203,095 + -0.3
1,203,095 + -1.0
1,203,095 + -2.4
1,203,096 - -0.9
1,203,096 - -1.2
1,203,118 + -3.0
1,203,118 + -2.1
1,203,118 + -2.6
1,203,119 - -0.2
1,203,127 - +1.6
1,203,251 - -0.6
1,203,302 + Psyr_1062 0.11 -1.9
1,203,302 + Psyr_1062 0.11 +0.4
1,203,302 + Psyr_1062 0.11 -0.3
1,203,302 + Psyr_1062 0.11 -2.2
1,203,302 + Psyr_1062 0.11 -1.0
1,203,302 + Psyr_1062 0.11 -0.2
1,203,302 + Psyr_1062 0.11 -0.4
1,203,302 + Psyr_1062 0.11 -2.5
1,203,302 + Psyr_1062 0.11 -1.5
1,203,302 + Psyr_1062 0.11 -2.4
1,203,302 + Psyr_1062 0.11 +0.3
1,203,302 + Psyr_1062 0.11 +0.6
1,203,303 - Psyr_1062 0.11 -1.2
1,203,303 - Psyr_1062 0.11 -1.8
1,203,303 - Psyr_1062 0.11 -0.7
1,203,303 - Psyr_1062 0.11 +0.4
1,203,303 - Psyr_1062 0.11 -2.3
1,203,303 - Psyr_1062 0.11 -0.7
1,203,303 - Psyr_1062 0.11 -0.3
1,203,303 - Psyr_1062 0.11 -0.2
1,203,303 - Psyr_1062 0.11 -1.0
1,203,335 + Psyr_1062 0.13 +0.8
1,203,335 + Psyr_1062 0.13 -0.1
1,203,335 + Psyr_1062 0.13 -2.8
1,203,336 - Psyr_1062 0.13 +0.5
1,203,336 - Psyr_1062 0.13 -1.8
1,203,336 - Psyr_1062 0.13 -2.6
1,203,339 - Psyr_1062 0.13 +1.0
1,203,431 + Psyr_1062 0.20 -0.4
1,203,431 + Psyr_1062 0.20 -0.8
1,203,431 + Psyr_1062 0.20 -2.2
1,203,431 + Psyr_1062 0.20 +0.4
1,203,431 + Psyr_1062 0.20 -1.9
1,203,431 + Psyr_1062 0.20 -1.2
1,203,431 + Psyr_1062 0.20 -1.1
1,203,431 + Psyr_1062 0.20 -1.9
1,203,432 - Psyr_1062 0.20 -1.2
1,203,432 - Psyr_1062 0.20 -0.9
1,203,432 - Psyr_1062 0.20 -1.3
1,203,432 - Psyr_1062 0.20 +0.1
1,203,432 - Psyr_1062 0.20 -1.1
1,203,455 + Psyr_1062 0.21 -0.7
1,203,455 + Psyr_1062 0.21 -2.5
1,203,559 + Psyr_1062 0.28 -0.8
1,203,559 + Psyr_1062 0.28 -0.2
1,203,560 - Psyr_1062 0.28 -2.6
1,203,615 - Psyr_1062 0.32 -2.7
1,203,692 + Psyr_1062 0.37 -0.9
1,203,692 + Psyr_1062 0.37 +0.1
1,203,692 + Psyr_1062 0.37 -1.4
1,203,693 - Psyr_1062 0.37 -0.8
1,203,693 - Psyr_1062 0.37 -1.5
1,203,693 - Psyr_1062 0.37 -0.2
1,203,693 - Psyr_1062 0.37 -3.1
1,203,693 - Psyr_1062 0.37 -0.8
1,203,693 - Psyr_1062 0.37 -1.0
1,203,693 - Psyr_1062 0.37 -2.6
1,203,693 - Psyr_1062 0.37 -0.2
1,203,693 - Psyr_1062 0.37 -1.6
1,203,693 - Psyr_1062 0.37 -0.8
1,203,950 + Psyr_1062 0.55 +0.7
1,203,950 + Psyr_1062 0.55 -1.8
1,203,950 + Psyr_1062 0.55 -2.1
1,203,950 + Psyr_1062 0.55 -2.5
1,203,950 + Psyr_1062 0.55 -0.8
1,203,951 - Psyr_1062 0.55 -0.2
1,203,951 - Psyr_1062 0.55 -0.0
1,204,304 + Psyr_1062 0.78 -0.3
1,204,304 + Psyr_1062 0.78 +0.0
1,204,305 - Psyr_1062 0.78 -2.2
1,204,305 - Psyr_1062 0.78 -0.8
1,204,424 + Psyr_1062 0.87 -0.1
1,204,424 + Psyr_1062 0.87 +0.1
1,204,425 - Psyr_1062 0.87 -0.4
1,204,425 - Psyr_1062 0.87 -1.2
1,204,479 + -0.7
1,204,479 + -1.5
1,204,501 + -1.4
1,204,501 + -1.6
1,204,501 + -0.1
1,204,503 + -0.8
1,204,503 + -0.9
1,204,504 - -0.6
1,204,504 - -1.4
1,204,504 - -0.4
1,204,530 + -1.3
1,204,530 + -1.8
1,204,564 + -0.0
1,204,570 + -1.2
1,204,571 - -1.3
1,204,571 - -2.7
1,204,571 - -0.3
1,204,571 - -0.1
1,204,574 + +1.0
1,204,574 + +0.7
1,204,574 + -0.3
1,204,575 - -1.8
1,204,575 - -0.7
1,204,575 - -2.1
1,204,597 + -2.1
1,204,624 - -2.6
1,204,630 - +1.4
1,204,635 + -0.9
1,204,635 + -1.7
1,204,726 - -0.8
1,204,735 + +0.2
1,204,736 - -0.8
1,204,736 - -0.7
1,204,938 + Psyr_1063 0.16 -1.9
1,204,938 + Psyr_1063 0.16 -2.8
1,204,938 + Psyr_1063 0.16 -0.6
1,204,939 - Psyr_1063 0.16 -1.6
1,204,939 - Psyr_1063 0.16 -1.1
1,204,939 - Psyr_1063 0.16 +1.4
1,204,939 - Psyr_1063 0.16 -1.3
1,204,968 + Psyr_1063 0.19 -0.6
1,204,968 + Psyr_1063 0.19 -1.1
1,204,969 - Psyr_1063 0.19 -2.4
1,204,969 - Psyr_1063 0.19 +1.0
1,204,969 - Psyr_1063 0.19 -1.1
1,205,109 + Psyr_1063 0.29 -2.2
1,205,109 + Psyr_1063 0.29 -1.6
1,205,110 - Psyr_1063 0.29 -2.8
1,205,271 + Psyr_1063 0.42 -3.2
1,205,271 + Psyr_1063 0.42 -0.5
1,205,271 + Psyr_1063 0.42 -2.3
1,205,271 + Psyr_1063 0.42 -1.3
1,205,271 + Psyr_1063 0.42 -1.0
1,205,271 + Psyr_1063 0.42 -0.9
1,205,271 + Psyr_1063 0.42 -0.9
1,205,271 + Psyr_1063 0.42 -0.9
1,205,271 + Psyr_1063 0.42 -0.0
1,205,271 + Psyr_1063 0.42 -0.0
1,205,271 + Psyr_1063 0.42 -3.1
1,205,271 + Psyr_1063 0.42 -0.6
1,205,272 - Psyr_1063 0.42 -2.6
1,205,272 - Psyr_1063 0.42 -1.5
1,205,272 - Psyr_1063 0.42 +1.2
1,205,272 - Psyr_1063 0.42 +0.7
1,205,272 - Psyr_1063 0.42 -3.3
1,205,272 - Psyr_1063 0.42 -0.2
1,205,272 - Psyr_1063 0.42 -1.4
1,205,272 - Psyr_1063 0.42 -1.8
1,205,272 - Psyr_1063 0.42 -0.1
1,205,272 - Psyr_1063 0.42 -0.8
1,205,272 - Psyr_1063 0.42 -2.7
1,205,272 - Psyr_1063 0.42 +1.3
1,205,274 + Psyr_1063 0.42 -2.9
1,205,275 - Psyr_1063 0.42 -0.7
1,205,377 + Psyr_1063 0.50 -0.8
1,205,377 + Psyr_1063 0.50 -1.4
1,205,378 - Psyr_1063 0.50 -1.4
1,205,409 + Psyr_1063 0.52 -0.5
1,205,410 - Psyr_1063 0.52 -0.8
1,205,410 - Psyr_1063 0.52 -1.0
1,205,410 - Psyr_1063 0.52 -0.8
1,205,410 - Psyr_1063 0.52 -1.9
1,205,538 + Psyr_1063 0.62 -0.5
1,205,538 + Psyr_1063 0.62 -0.3
1,205,538 + Psyr_1063 0.62 -0.2
1,205,555 - Psyr_1063 0.63 -1.2
1,205,555 - Psyr_1063 0.63 -1.6

Or see this region's nucleotide sequence