Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0921 and Psyr_0922 are separated by 9 nucleotides Psyr_0922 and Psyr_0923 overlap by 4 nucleotides Psyr_0923 and Psyr_0924 are separated by 109 nucleotides Psyr_0924 and Psyr_0925 are separated by 8 nucleotides
Psyr_0921: Psyr_0921 - GtrA-like protein, at 1,048,744 to 1,049,232
_0921
Psyr_0922: Psyr_0922 - Glycosyl transferase, family 2, at 1,049,242 to 1,050,096
_0922
Psyr_0923: Psyr_0923 - hypothetical protein, at 1,050,093 to 1,051,553
_0923
Psyr_0924: Psyr_0924 - Glucose-1-phosphate thymidylyltransferase, at 1,051,663 to 1,052,544
_0924
Psyr_0925: Psyr_0925 - dTDP-4-dehydrorhamnose reductase, at 1,052,553 to 1,053,458
_0925
Position (kb) 1050
1051
1052 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1050.122 kb on + strand at 1050.130 kb on + strand at 1050.136 kb on + strand at 1050.152 kb on + strand at 1050.153 kb on - strand at 1050.153 kb on - strand at 1050.302 kb on - strand, within Psyr_0923 at 1050.489 kb on - strand, within Psyr_0923 at 1050.489 kb on - strand, within Psyr_0923 at 1050.579 kb on - strand, within Psyr_0923 at 1050.610 kb on + strand, within Psyr_0923 at 1050.611 kb on - strand, within Psyr_0923 at 1050.625 kb on - strand, within Psyr_0923 at 1050.629 kb on + strand, within Psyr_0923 at 1050.651 kb on + strand, within Psyr_0923 at 1050.822 kb on - strand, within Psyr_0923 at 1050.893 kb on + strand, within Psyr_0923 at 1051.041 kb on - strand, within Psyr_0923 at 1051.097 kb on + strand, within Psyr_0923 at 1051.097 kb on + strand, within Psyr_0923 at 1051.098 kb on - strand, within Psyr_0923 at 1051.101 kb on + strand, within Psyr_0923 at 1051.101 kb on + strand, within Psyr_0923 at 1051.141 kb on + strand, within Psyr_0923 at 1051.142 kb on - strand at 1051.173 kb on + strand, within Psyr_0923 at 1051.234 kb on + strand, within Psyr_0923 at 1051.235 kb on - strand, within Psyr_0923 at 1051.235 kb on - strand, within Psyr_0923 at 1051.235 kb on - strand, within Psyr_0923 at 1051.326 kb on + strand, within Psyr_0923 at 1051.326 kb on + strand, within Psyr_0923 at 1051.326 kb on + strand, within Psyr_0923 at 1051.327 kb on - strand, within Psyr_0923 at 1051.452 kb on - strand at 1051.502 kb on + strand at 1051.502 kb on + strand at 1051.510 kb on + strand at 1051.510 kb on + strand at 1051.510 kb on + strand at 1051.563 kb on + strand at 1051.563 kb on + strand at 1051.563 kb on + strand at 1051.563 kb on + strand at 1051.563 kb on + strand at 1051.563 kb on + strand at 1051.563 kb on + strand at 1051.563 kb on + strand at 1051.563 kb on + strand at 1051.563 kb on + strand at 1051.564 kb on - strand at 1051.564 kb on - strand at 1051.564 kb on - strand at 1051.564 kb on - strand at 1051.564 kb on - strand at 1051.564 kb on - strand at 1051.564 kb on - strand at 1051.564 kb on - strand at 1051.904 kb on - strand, within Psyr_0924 at 1052.013 kb on - strand, within Psyr_0924 at 1052.037 kb on - strand, within Psyr_0924
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 1,050,122 + +0.4 1,050,130 + -2.6 1,050,136 + -2.0 1,050,152 + -2.0 1,050,153 - -0.6 1,050,153 - -3.0 1,050,302 - Psyr_0923 0.14 +0.4 1,050,489 - Psyr_0923 0.27 -1.9 1,050,489 - Psyr_0923 0.27 -0.4 1,050,579 - Psyr_0923 0.33 -1.1 1,050,610 + Psyr_0923 0.35 +0.1 1,050,611 - Psyr_0923 0.35 -0.0 1,050,625 - Psyr_0923 0.36 -0.9 1,050,629 + Psyr_0923 0.37 -2.1 1,050,651 + Psyr_0923 0.38 -1.6 1,050,822 - Psyr_0923 0.50 -1.1 1,050,893 + Psyr_0923 0.55 -2.5 1,051,041 - Psyr_0923 0.65 -1.6 1,051,097 + Psyr_0923 0.69 -2.1 1,051,097 + Psyr_0923 0.69 -2.0 1,051,098 - Psyr_0923 0.69 -0.9 1,051,101 + Psyr_0923 0.69 -1.6 1,051,101 + Psyr_0923 0.69 -2.0 1,051,141 + Psyr_0923 0.72 -1.9 1,051,142 - -0.9 1,051,173 + Psyr_0923 0.74 -2.3 1,051,234 + Psyr_0923 0.78 -0.9 1,051,235 - Psyr_0923 0.78 -1.1 1,051,235 - Psyr_0923 0.78 -0.9 1,051,235 - Psyr_0923 0.78 -3.0 1,051,326 + Psyr_0923 0.84 -1.1 1,051,326 + Psyr_0923 0.84 -1.1 1,051,326 + Psyr_0923 0.84 -3.6 1,051,327 - Psyr_0923 0.84 -0.9 1,051,452 - -1.1 1,051,502 + -1.4 1,051,502 + -1.7 1,051,510 + -0.1 1,051,510 + -2.4 1,051,510 + -1.4 1,051,563 + +1.6 1,051,563 + +0.4 1,051,563 + -0.6 1,051,563 + +1.2 1,051,563 + +2.8 1,051,563 + +1.2 1,051,563 + -0.8 1,051,563 + +1.3 1,051,563 + +0.3 1,051,563 + -0.3 1,051,564 - +0.2 1,051,564 - -0.6 1,051,564 - +0.5 1,051,564 - +0.2 1,051,564 - -0.9 1,051,564 - +0.0 1,051,564 - -0.4 1,051,564 - -0.3 1,051,904 - Psyr_0924 0.27 -1.6 1,052,013 - Psyr_0924 0.40 +0.0 1,052,037 - Psyr_0924 0.42 +1.4
Or see this region's nucleotide sequence