Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0918

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
1,041,830	+				-1.4
1,041,830	+				+0.4
1,041,830	+				+1.6
1,041,830	+				-1.6
1,041,830	+				+0.3
1,041,830	+				+1.6
1,041,830	+				+0.5
1,041,831	-				+3.1
1,041,831	-				-1.1
1,041,832	+				-3.2
1,041,832	+				-1.6
1,041,832	+				-0.4
1,041,833	-				-1.9
1,041,852	+				-3.4
1,041,852	+				+0.4
1,041,853	-				-0.7
1,041,882	+				+0.7
1,041,882	+				+1.9
1,041,882	+				+1.9
1,041,883	-				-2.8
1,041,883	-				-0.9
1,041,883	-				-0.1
1,041,883	-				+0.2
1,041,883	-				-1.9
1,041,883	-				-0.5
1,041,883	-				-2.5
1,041,883	-				-1.4
1,041,883	-				-0.1
1,041,883	-				+0.6
1,041,883	-				-0.1
1,041,883	-				-0.8
1,041,883	-				-0.2
1,041,914	-				-2.5
1,041,914	-				-3.8
1,041,917	+				+0.3
1,041,918	-				-2.5
1,041,930	+				+0.9
1,041,931	-				-3.2
1,041,931	-				-2.7
1,041,931	-				+0.3
1,041,931	-				-1.1
1,042,085	+				-1.9
1,042,085	+				-1.1
1,042,085	+				-2.3
1,042,085	+				-2.0
1,042,085	+				-1.1
1,042,085	+				+1.4
1,042,085	+				-0.1
1,042,086	-				-2.5
1,042,086	-				+1.4
1,042,086	-				-1.4
1,042,086	-				+0.4
1,042,086	-				-2.3
1,042,086	-				-0.9
1,042,086	-				-0.6
1,042,086	-				-1.1
1,042,088	-				-2.5
1,042,088	-				-1.1
1,042,088	-				+0.4
1,042,088	-				+0.4
1,042,173	+		Psyr_0917	0.18	-0.9
1,042,174	-		Psyr_0917	0.18	-1.1
1,042,230	+		Psyr_0917	0.25	-1.7
1,042,230	+		Psyr_0917	0.25	-0.6
1,042,230	+		Psyr_0917	0.25	-2.6
1,042,230	+		Psyr_0917	0.25	-0.1
1,042,230	+		Psyr_0917	0.25	+1.4
1,042,230	+		Psyr_0917	0.25	-0.1
1,042,231	-		Psyr_0917	0.25	-0.1
1,042,231	-		Psyr_0917	0.25	-0.1
1,042,231	-		Psyr_0917	0.25	-1.1
1,042,231	-		Psyr_0917	0.25	+0.4
1,042,231	-		Psyr_0917	0.25	-0.9
1,042,231	-		Psyr_0917	0.25	-1.7
1,042,231	-		Psyr_0917	0.25	-0.1
1,042,231	-		Psyr_0917	0.25	-1.7
1,042,231	-		Psyr_0917	0.25	-1.1
1,042,231	-		Psyr_0917	0.25	-1.6
1,042,231	-		Psyr_0917	0.25	+0.4
1,042,259	+		Psyr_0917	0.29	+1.4
1,042,398	+		Psyr_0917	0.46	-0.1
1,042,398	+		Psyr_0917	0.46	-0.1
1,042,398	+		Psyr_0917	0.46	-0.9
1,042,398	+		Psyr_0917	0.46	-0.1
1,042,398	+		Psyr_0917	0.46	-0.9
1,042,398	+		Psyr_0917	0.46	-0.1
1,042,398	+		Psyr_0917	0.46	-0.1
1,042,399	-		Psyr_0917	0.46	-2.9
1,042,399	-		Psyr_0917	0.46	-2.0
1,042,399	-		Psyr_0917	0.46	-1.2
1,042,399	-		Psyr_0917	0.46	-2.1
1,042,399	-		Psyr_0917	0.46	+1.4
1,042,399	-		Psyr_0917	0.46	-1.4
1,042,402	+		Psyr_0917	0.47	+0.4
1,042,402	+		Psyr_0917	0.47	+0.4
1,042,402	+		Psyr_0917	0.47	-0.9
1,042,402	+		Psyr_0917	0.47	+0.9
1,042,403	-		Psyr_0917	0.47	-0.6
1,042,403	-		Psyr_0917	0.47	-2.6
1,042,403	-		Psyr_0917	0.47	-0.6
1,042,403	-		Psyr_0917	0.47	-1.9
1,042,403	-		Psyr_0917	0.47	-0.6
1,042,403	-		Psyr_0917	0.47	-0.1
1,042,496	+		Psyr_0917	0.58	+0.4
1,042,543	+		Psyr_0917	0.64	-0.6
1,042,543	+		Psyr_0917	0.64	-0.6
1,042,543	+		Psyr_0917	0.64	+1.4
1,042,543	+		Psyr_0917	0.64	-2.1
1,042,544	-		Psyr_0917	0.64	-0.1
1,042,544	-		Psyr_0917	0.64	-1.9
1,042,544	-		Psyr_0917	0.64	+1.4
1,042,544	-		Psyr_0917	0.64	-2.7
1,042,544	-		Psyr_0917	0.64	+0.9
1,042,544	-		Psyr_0917	0.64	-1.7
1,042,544	-		Psyr_0917	0.64	-0.6
1,042,550	-		Psyr_0917	0.65	-1.1
1,042,550	-		Psyr_0917	0.65	+1.3
1,042,588	+		Psyr_0917	0.70	-0.6
1,042,588	+		Psyr_0917	0.70	-2.0
1,042,589	-		Psyr_0917	0.70	-0.9
1,042,589	-		Psyr_0917	0.70	-0.9
1,042,601	+		Psyr_0917	0.72	-1.4
1,042,708	-		Psyr_0917	0.85	-1.1
1,042,733	+		Psyr_0917	0.88	-1.7
1,042,733	+		Psyr_0917	0.88	-1.6
1,042,733	+		Psyr_0917	0.88	-0.1
1,042,734	-		Psyr_0917	0.88	-1.9
1,042,819	+				-0.9
1,042,819	+				-0.6
1,042,819	+				+1.4
1,042,819	+				-0.1
1,042,819	+				-0.1
1,042,819	+				-1.9
1,042,819	+				-0.9
1,042,819	+				-0.6
1,042,819	+				-0.9
1,042,819	+				-0.6
1,042,819	+				+0.4
1,042,819	+				-1.6
1,042,819	+				-1.1
1,042,819	+				-1.6
1,042,820	-				-0.1
1,042,820	-				-0.1
1,042,820	-				-1.7
1,042,820	-				-1.6
1,042,820	-				-1.7
1,042,820	-				-0.6
1,042,820	-				-0.1
1,042,820	-				-1.1
1,042,820	-				-1.4
1,042,820	-				-1.1
1,042,820	-				+0.4
1,042,820	-				+0.4
1,042,820	-				-1.4
1,042,820	-				-0.9
1,042,822	+				+0.3
1,042,822	+				-1.7
1,042,822	+				+5.2
1,042,822	+				-0.9
1,042,823	-				+0.4
1,042,823	-				-2.0
1,042,823	-				-1.6
1,042,833	+				+0.5
1,042,833	+				-2.1
1,042,834	-				-0.9
1,042,844	-				-1.1
1,042,869	-				-1.1
1,042,869	-				-0.6
1,042,869	-				-1.6
1,042,943	-				-0.6
1,043,050	+		Psyr_0918	0.19	-1.9
1,043,089	+		Psyr_0918	0.22	-0.6
1,043,113	+		Psyr_0918	0.24	-0.6
1,043,113	+		Psyr_0918	0.24	+5.8
1,043,144	+		Psyr_0918	0.26	-0.9
1,043,144	+		Psyr_0918	0.26	-0.6
1,043,145	-		Psyr_0918	0.26	-2.4
1,043,145	-		Psyr_0918	0.26	-0.9
1,043,145	-		Psyr_0918	0.26	-2.5
1,043,232	-		Psyr_0918	0.34	-0.7
1,043,232	-		Psyr_0918	0.34	-0.1
1,043,256	-		Psyr_0918	0.36	+0.4
1,043,256	-		Psyr_0918	0.36	-1.4
1,043,256	-		Psyr_0918	0.36	+0.4
1,043,256	-		Psyr_0918	0.36	-1.7
1,043,256	-		Psyr_0918	0.36	-1.7
1,043,256	-		Psyr_0918	0.36	-2.3
1,043,256	-		Psyr_0918	0.36	-1.9
1,043,256	-		Psyr_0918	0.36	-0.1
1,043,256	-		Psyr_0918	0.36	+1.4
1,043,266	+		Psyr_0918	0.36	-1.7
1,043,316	+		Psyr_0918	0.40	-2.1
1,043,316	+		Psyr_0918	0.40	+0.4
1,043,316	+		Psyr_0918	0.40	-3.1
1,043,316	+		Psyr_0918	0.40	+0.2
1,043,316	+		Psyr_0918	0.40	-1.9
1,043,316	+		Psyr_0918	0.40	+0.4
1,043,316	+		Psyr_0918	0.40	-0.9
1,043,317	-		Psyr_0918	0.41	-2.1
1,043,317	-		Psyr_0918	0.41	-0.9
1,043,317	-		Psyr_0918	0.41	-1.9
1,043,320	+		Psyr_0918	0.41	-0.2
1,043,320	+		Psyr_0918	0.41	-0.1
1,043,321	-		Psyr_0918	0.41	-2.6
1,043,350	+		Psyr_0918	0.43	-1.4
1,043,354	+		Psyr_0918	0.44	+1.4
1,043,355	-		Psyr_0918	0.44	-1.7
1,043,365	+		Psyr_0918	0.44	-2.8
1,043,366	-		Psyr_0918	0.45	-1.4
1,043,366	-		Psyr_0918	0.45	+1.0
1,043,366	-		Psyr_0918	0.45	-0.6
1,043,380	+		Psyr_0918	0.46	-2.0
1,043,380	+		Psyr_0918	0.46	-1.6
1,043,380	+		Psyr_0918	0.46	-0.9
1,043,380	+		Psyr_0918	0.46	+0.4
1,043,380	+		Psyr_0918	0.46	-2.4
1,043,381	-		Psyr_0918	0.46	-1.4
1,043,381	-		Psyr_0918	0.46	-2.1
1,043,382	+		Psyr_0918	0.46	+1.4
1,043,382	+		Psyr_0918	0.46	-1.1
1,043,382	+		Psyr_0918	0.46	-1.1
1,043,382	+		Psyr_0918	0.46	-0.1
1,043,382	+		Psyr_0918	0.46	-0.6
1,043,383	-		Psyr_0918	0.46	-0.9
1,043,383	-		Psyr_0918	0.46	-2.5
1,043,383	-		Psyr_0918	0.46	-0.1
1,043,383	-		Psyr_0918	0.46	-0.1
1,043,383	-		Psyr_0918	0.46	-1.1
1,043,383	-		Psyr_0918	0.46	-0.1
1,043,383	-		Psyr_0918	0.46	-1.1
1,043,416	+		Psyr_0918	0.49	-1.7
1,043,467	-		Psyr_0918	0.53	+1.4
1,043,482	+		Psyr_0918	0.54	-1.4
1,043,483	-		Psyr_0918	0.54	-0.6
1,043,490	+		Psyr_0918	0.55	-2.4
1,043,527	+		Psyr_0918	0.58	-0.9
1,043,527	+		Psyr_0918	0.58	-0.9
1,043,662	+		Psyr_0918	0.69	-1.1
1,043,669	+		Psyr_0918	0.69	-0.9
1,043,669	+		Psyr_0918	0.69	+0.4
1,043,669	+		Psyr_0918	0.69	-1.1
1,043,669	+		Psyr_0918	0.69	-0.1
1,043,669	+		Psyr_0918	0.69	+0.4
1,043,670	-		Psyr_0918	0.70	-1.1
1,043,670	-		Psyr_0918	0.70	-3.0
1,043,670	-		Psyr_0918	0.70	-2.4
1,043,670	-		Psyr_0918	0.70	-2.6
1,043,670	-		Psyr_0918	0.70	-1.9
1,043,670	-		Psyr_0918	0.70	-2.4
1,043,670	-		Psyr_0918	0.70	-2.8
1,043,670	-		Psyr_0918	0.70	-2.0
1,043,670	-		Psyr_0918	0.70	-2.0
1,043,670	-		Psyr_0918	0.70	-2.9
1,043,719	+		Psyr_0918	0.74	-0.9
1,043,743	-		Psyr_0918	0.76	-2.9
1,043,743	-		Psyr_0918	0.76	-2.3
1,043,747	+		Psyr_0918	0.76	-0.1
1,043,747	+		Psyr_0918	0.76	+0.4
1,043,846	+		Psyr_0918	0.84	-1.9
1,043,847	-		Psyr_0918	0.84	-0.1
1,043,847	-		Psyr_0918	0.84	-3.0
1,043,867	-		Psyr_0918	0.86	-2.7
1,043,937	-				-1.7
1,043,937	-				-2.6
1,043,937	-				-0.9
1,043,937	-				-0.9
1,043,937	-				-0.8
1,043,937	-				-3.2
1,043,947	-				-0.6
1,043,947	-				-2.3
1,043,947	-				-2.6
1,043,970	+				-1.9
1,043,970	+				-1.1
1,043,970	+				-0.1
1,043,971	-				-2.7
1,043,971	-				-1.1
1,043,971	-				-1.7
1,043,977	+				-2.6
1,043,978	-				-2.4
1,044,034	+				-2.6
1,044,034	+				+0.2
1,044,034	+				+1.1
1,044,035	-				-2.1
1,044,035	-				+2.6
1,044,035	-				+0.7
1,044,035	-				-4.2
1,044,035	-				-1.6
1,044,035	-				-0.9
1,044,035	-				-1.4
1,044,052	+				+1.0
1,044,052	+				-2.1
1,044,053	-				-1.4
1,044,115	+				-1.1
1,044,116	-				+0.9
1,044,116	-				-0.5
1,044,116	-				-0.3
1,044,116	-				-1.7
1,044,116	-				-0.6
1,044,116	-				-1.7
1,044,137	+				-2.5
1,044,137	+				-0.2
1,044,138	-				-2.1
1,044,234	+		Psyr_0919	0.10	-1.1
1,044,252	+		Psyr_0919	0.11	-0.6
1,044,253	-		Psyr_0919	0.11	-0.1
1,044,345	+		Psyr_0919	0.16	-3.4
1,044,346	-		Psyr_0919	0.16	-2.3
1,044,390	+		Psyr_0919	0.18	+0.4
1,044,390	+		Psyr_0919	0.18	-2.5
1,044,390	+		Psyr_0919	0.18	-2.0
1,044,419	+		Psyr_0919	0.20	-2.6
1,044,420	-		Psyr_0919	0.20	-0.7
1,044,422	+		Psyr_0919	0.20	-2.1
1,044,422	+		Psyr_0919	0.20	-0.8
1,044,423	-		Psyr_0919	0.20	-0.9
1,044,441	+		Psyr_0919	0.21	-0.8
1,044,493	+		Psyr_0919	0.23	-0.6
1,044,493	+		Psyr_0919	0.23	-2.3
1,044,494	-		Psyr_0919	0.24	-0.7
1,044,510	+		Psyr_0919	0.24	-0.6
1,044,510	+		Psyr_0919	0.24	-1.6
1,044,511	-		Psyr_0919	0.24	+0.7
1,044,511	-		Psyr_0919	0.24	-1.4
1,044,511	-		Psyr_0919	0.24	-2.0
1,044,511	-		Psyr_0919	0.24	-0.5
1,044,554	-		Psyr_0919	0.27	-0.0
1,044,554	-		Psyr_0919	0.27	-1.7
1,044,554	-		Psyr_0919	0.27	-3.1
1,044,708	-		Psyr_0919	0.35	-2.3
1,044,708	-		Psyr_0919	0.35	-1.0
1,044,708	-		Psyr_0919	0.35	-1.4
1,044,733	+		Psyr_0919	0.36	-0.9
1,044,734	-		Psyr_0919	0.36	-0.2
1,044,734	-		Psyr_0919	0.36	-0.4
1,044,807	+		Psyr_0919	0.40	+0.9
1,044,807	+		Psyr_0919	0.40	-2.7
1,044,808	-		Psyr_0919	0.40	-3.2
1,044,808	-		Psyr_0919	0.40	-2.0
1,044,808	-		Psyr_0919	0.40	-0.9
1,044,808	-		Psyr_0919	0.40	-2.5
1,044,808	-		Psyr_0919	0.40	-2.6