Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0915

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
1,038,612	+		Psyr_0914	0.22	-0.4
1,038,612	+		Psyr_0914	0.22	-2.3
1,038,612	+		Psyr_0914	0.22	-1.6
1,038,612	+		Psyr_0914	0.22	-1.9
1,038,613	-		Psyr_0914	0.22	-1.1
1,038,613	-		Psyr_0914	0.22	-2.4
1,038,656	+		Psyr_0914	0.26	-0.9
1,038,656	+		Psyr_0914	0.26	-2.1
1,038,656	+		Psyr_0914	0.26	-2.1
1,038,656	+		Psyr_0914	0.26	-2.7
1,038,657	-		Psyr_0914	0.26	-1.0
1,038,657	-		Psyr_0914	0.26	-3.4
1,038,657	-		Psyr_0914	0.26	-1.6
1,038,657	-		Psyr_0914	0.26	-3.0
1,038,657	-		Psyr_0914	0.26	+0.4
1,038,657	-		Psyr_0914	0.26	-0.9
1,038,682	-		Psyr_0914	0.28	-0.5
1,038,861	+		Psyr_0914	0.45	-2.1
1,038,861	+		Psyr_0914	0.45	-3.7
1,038,861	+		Psyr_0914	0.45	-1.6
1,038,861	+		Psyr_0914	0.45	-1.4
1,038,862	-		Psyr_0914	0.45	-1.2
1,038,862	-		Psyr_0914	0.45	-1.2
1,038,862	-		Psyr_0914	0.45	-2.2
1,038,862	-		Psyr_0914	0.45	-1.3
1,038,862	-		Psyr_0914	0.45	-1.4
1,038,862	-		Psyr_0914	0.45	-1.3
1,039,026	+		Psyr_0914	0.59	-1.9
1,039,027	-		Psyr_0914	0.59	-1.3
1,039,089	+		Psyr_0914	0.65	-2.5
1,039,090	-		Psyr_0914	0.65	-1.4
1,039,090	-		Psyr_0914	0.65	-2.5
1,039,352	-		Psyr_0914	0.89	+0.4
1,039,373	+				-1.4
1,039,373	+				-1.1
1,039,373	+				-3.7
1,039,374	-				-2.1
1,039,374	-				-1.7
1,039,444	-				-3.5
1,039,446	+				-3.1
1,039,447	-				+2.4
1,039,447	-				-1.3
1,039,525	+				+0.1
1,039,535	+				-0.3
1,039,555	-				+0.9
1,039,573	-				-1.2
1,039,573	-				-0.1
1,039,580	-				-1.4
1,039,580	-				-1.2
1,039,872	+		Psyr_0915	0.31	-1.6
1,039,872	+		Psyr_0915	0.31	-3.3
1,039,872	+		Psyr_0915	0.31	-1.1
1,039,872	+		Psyr_0915	0.31	-2.6
1,039,873	-		Psyr_0915	0.31	-1.3
1,039,873	-		Psyr_0915	0.31	-1.9
1,039,873	-		Psyr_0915	0.31	-2.8
1,039,990	+		Psyr_0915	0.44	-1.7
1,039,990	+		Psyr_0915	0.44	-1.9
1,039,990	+		Psyr_0915	0.44	-3.0
1,039,990	+		Psyr_0915	0.44	-4.3
1,039,991	-		Psyr_0915	0.44	-4.8
1,039,991	-		Psyr_0915	0.44	-2.0
1,039,991	-		Psyr_0915	0.44	-2.9
1,039,991	-		Psyr_0915	0.44	-1.7
1,039,991	-		Psyr_0915	0.44	-2.1
1,039,991	-		Psyr_0915	0.44	-0.1
1,039,991	-		Psyr_0915	0.44	-3.8
1,039,991	-		Psyr_0915	0.44	+0.4
1,040,047	+		Psyr_0915	0.51	-3.1
1,040,047	+		Psyr_0915	0.51	-2.1
1,040,047	+		Psyr_0915	0.51	-1.9
1,040,047	+		Psyr_0915	0.51	-3.3
1,040,047	+		Psyr_0915	0.51	-2.9
1,040,047	+		Psyr_0915	0.51	-3.2
1,040,047	+		Psyr_0915	0.51	-1.0
1,040,047	+		Psyr_0915	0.51	-2.2
1,040,047	+		Psyr_0915	0.51	-3.6
1,040,047	+		Psyr_0915	0.51	-1.7
1,040,047	+		Psyr_0915	0.51	-1.1
1,040,047	+		Psyr_0915	0.51	-2.0
1,040,048	-		Psyr_0915	0.51	-2.8
1,040,048	-		Psyr_0915	0.51	-2.0
1,040,048	-		Psyr_0915	0.51	-2.9
1,040,048	-		Psyr_0915	0.51	-1.7
1,040,048	-		Psyr_0915	0.51	-2.4
1,040,048	-		Psyr_0915	0.51	+0.6
1,040,048	-		Psyr_0915	0.51	-2.3
1,040,048	-		Psyr_0915	0.51	-2.5
1,040,048	-		Psyr_0915	0.51	-1.4
1,040,048	-		Psyr_0915	0.51	-3.7
1,040,074	+		Psyr_0915	0.54	-3.4
1,040,075	-		Psyr_0915	0.54	-3.1
1,040,075	-		Psyr_0915	0.54	-1.8
1,040,135	-		Psyr_0915	0.60	-1.4
1,040,234	-		Psyr_0915	0.71	-2.6
1,040,354	-		Psyr_0915	0.85	-2.4
1,040,354	-		Psyr_0915	0.85	-1.4
1,040,441	+				-0.1
1,040,441	+				-3.2
1,040,442	-				-2.7
1,040,483	+				-2.6
1,040,483	+				-1.6
1,040,483	+				-2.2
1,040,512	+				-1.1
1,040,566	+				-0.8
1,040,664	-		Psyr_0916	0.17	-0.3
1,040,833	+		Psyr_0916	0.33	-2.7
1,040,833	+		Psyr_0916	0.33	-2.0
1,040,833	+		Psyr_0916	0.33	-1.5
1,040,833	+		Psyr_0916	0.33	+0.6
1,040,833	+		Psyr_0916	0.33	+0.4
1,040,833	+		Psyr_0916	0.33	-0.6
1,040,833	+		Psyr_0916	0.33	+0.3
1,040,833	+		Psyr_0916	0.33	-2.5
1,040,833	+		Psyr_0916	0.33	-0.4
1,040,833	+		Psyr_0916	0.33	-1.4
1,040,834	-		Psyr_0916	0.33	-1.4
1,040,844	+		Psyr_0916	0.34	-3.5
1,040,844	+		Psyr_0916	0.34	-1.4
1,040,844	+		Psyr_0916	0.34	-0.7
1,040,845	-		Psyr_0916	0.34	-0.9
1,040,845	-		Psyr_0916	0.34	+0.1
1,040,845	-		Psyr_0916	0.34	+0.4
1,040,845	-		Psyr_0916	0.34	-0.2
1,041,019	-		Psyr_0916	0.51	-1.1
1,041,030	+		Psyr_0916	0.52	-2.7
1,041,087	+		Psyr_0916	0.58	+0.4
1,041,104	+		Psyr_0916	0.60	-2.1
1,041,104	+		Psyr_0916	0.60	-2.1
1,041,104	+		Psyr_0916	0.60	+1.9
1,041,105	-		Psyr_0916	0.60	-0.3
1,041,105	-		Psyr_0916	0.60	+0.8
1,041,105	-		Psyr_0916	0.60	-1.4
1,041,285	+		Psyr_0916	0.77	-1.4
1,041,285	+		Psyr_0916	0.77	+1.8
1,041,285	+		Psyr_0916	0.77	-2.0
1,041,285	+		Psyr_0916	0.77	-0.7
1,041,285	+		Psyr_0916	0.77	-1.1
1,041,286	-		Psyr_0916	0.77	-0.3
1,041,286	-		Psyr_0916	0.77	-1.6
1,041,305	-		Psyr_0916	0.79	-2.2
1,041,305	-		Psyr_0916	0.79	-1.2
1,041,348	+		Psyr_0916	0.83	-0.1
1,041,349	-		Psyr_0916	0.83	-1.9
1,041,349	-		Psyr_0916	0.83	-0.8
1,041,367	+		Psyr_0916	0.85	+1.0
1,041,395	+		Psyr_0916	0.88	-3.1
1,041,395	+		Psyr_0916	0.88	-3.2
1,041,395	+		Psyr_0916	0.88	-0.1
1,041,395	+		Psyr_0916	0.88	-0.1
1,041,395	+		Psyr_0916	0.88	+0.0
1,041,395	+		Psyr_0916	0.88	-0.6
1,041,395	+		Psyr_0916	0.88	+0.4
1,041,395	+		Psyr_0916	0.88	-0.8
1,041,396	-		Psyr_0916	0.88	-0.9
1,041,396	-		Psyr_0916	0.88	-1.3
1,041,396	-		Psyr_0916	0.88	-0.8
1,041,396	-		Psyr_0916	0.88	-2.3
1,041,396	-		Psyr_0916	0.88	-2.0
1,041,396	-		Psyr_0916	0.88	-0.5
1,041,396	-		Psyr_0916	0.88	-1.3
1,041,396	-		Psyr_0916	0.88	-2.9
1,041,396	-		Psyr_0916	0.88	-0.7
1,041,397	+		Psyr_0916	0.88	-0.9
1,041,397	+		Psyr_0916	0.88	-2.6
1,041,398	-		Psyr_0916	0.88	+0.2
1,041,430	-				-1.6
1,041,430	-				-2.0
1,041,445	+				-1.8
1,041,447	+				+0.9
1,041,447	+				-0.4
1,041,447	+				-0.6
1,041,448	-				-1.1
1,041,448	-				-2.3