Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0848

Experiment: apoplastic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0846 and Psyr_0847 are separated by 2 nucleotidesPsyr_0847 and Psyr_0848 are separated by 47 nucleotidesPsyr_0848 and Psyr_0849 are separated by 170 nucleotides Psyr_0846: Psyr_0846 - acetolactate synthase, large subunit, at 958,172 to 959,896 _0846 Psyr_0847: Psyr_0847 - acetolactate synthase, small subunit, at 959,899 to 960,390 _0847 Psyr_0848: Psyr_0848 - ketol-acid reductoisomerase, at 960,438 to 961,454 _0848 Psyr_0849: Psyr_0849 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 961,625 to 962,470 _0849 Position (kb) 960 961 962Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 959.567 kb on + strand, within Psyr_0846at 959.568 kb on - strand, within Psyr_0846at 959.642 kb on + strand, within Psyr_0846at 959.642 kb on + strand, within Psyr_0846at 959.666 kb on + strand, within Psyr_0846at 959.666 kb on + strand, within Psyr_0846at 959.666 kb on + strand, within Psyr_0846at 959.666 kb on + strand, within Psyr_0846at 959.666 kb on + strand, within Psyr_0846at 959.666 kb on + strand, within Psyr_0846at 959.667 kb on - strand, within Psyr_0846at 959.667 kb on - strand, within Psyr_0846at 959.708 kb on + strand, within Psyr_0846at 959.709 kb on - strand, within Psyr_0846at 959.728 kb on + strandat 959.866 kb on + strandat 959.867 kb on - strandat 959.894 kb on + strandat 959.894 kb on + strandat 959.894 kb on + strandat 959.894 kb on + strandat 959.894 kb on + strandat 959.894 kb on + strandat 959.894 kb on + strandat 959.894 kb on + strandat 959.895 kb on - strandat 959.895 kb on - strandat 959.895 kb on - strandat 959.895 kb on - strandat 959.895 kb on - strandat 959.895 kb on - strandat 959.895 kb on - strandat 959.895 kb on - strandat 959.907 kb on + strandat 959.976 kb on + strand, within Psyr_0847at 959.976 kb on + strand, within Psyr_0847at 959.977 kb on - strand, within Psyr_0847at 959.977 kb on - strand, within Psyr_0847at 959.977 kb on - strand, within Psyr_0847at 959.980 kb on + strand, within Psyr_0847at 959.980 kb on + strand, within Psyr_0847at 959.980 kb on + strand, within Psyr_0847at 959.980 kb on + strand, within Psyr_0847at 959.980 kb on + strand, within Psyr_0847at 959.980 kb on + strand, within Psyr_0847at 959.980 kb on + strand, within Psyr_0847at 959.980 kb on + strand, within Psyr_0847at 959.981 kb on - strand, within Psyr_0847at 959.981 kb on - strand, within Psyr_0847at 959.981 kb on - strand, within Psyr_0847at 959.981 kb on - strand, within Psyr_0847at 959.981 kb on - strand, within Psyr_0847at 959.981 kb on - strand, within Psyr_0847at 959.981 kb on - strand, within Psyr_0847at 960.050 kb on + strand, within Psyr_0847at 960.050 kb on + strand, within Psyr_0847at 960.051 kb on - strand, within Psyr_0847at 960.051 kb on - strand, within Psyr_0847at 960.257 kb on - strand, within Psyr_0847at 960.388 kb on + strandat 960.388 kb on + strandat 960.397 kb on + strandat 960.398 kb on - strandat 960.398 kb on - strandat 960.398 kb on - strandat 960.423 kb on + strandat 960.702 kb on + strand, within Psyr_0848at 960.702 kb on + strand, within Psyr_0848at 960.703 kb on - strand, within Psyr_0848at 960.703 kb on - strand, within Psyr_0848at 960.703 kb on - strand, within Psyr_0848at 960.774 kb on + strand, within Psyr_0848at 960.894 kb on + strand, within Psyr_0848at 960.936 kb on + strand, within Psyr_0848at 960.937 kb on - strand, within Psyr_0848at 960.937 kb on - strand, within Psyr_0848at 961.107 kb on + strand, within Psyr_0848at 961.107 kb on + strand, within Psyr_0848at 961.108 kb on - strand, within Psyr_0848at 961.108 kb on - strand, within Psyr_0848at 961.152 kb on + strand, within Psyr_0848at 961.152 kb on + strand, within Psyr_0848at 961.152 kb on + strand, within Psyr_0848at 961.152 kb on + strand, within Psyr_0848at 961.152 kb on + strand, within Psyr_0848at 961.152 kb on + strand, within Psyr_0848at 961.153 kb on - strand, within Psyr_0848at 961.153 kb on - strand, within Psyr_0848at 961.153 kb on - strand, within Psyr_0848at 961.153 kb on - strand, within Psyr_0848at 961.153 kb on - strand, within Psyr_0848at 961.153 kb on - strand, within Psyr_0848at 961.153 kb on - strand, within Psyr_0848at 961.153 kb on - strand, within Psyr_0848at 961.179 kb on + strand, within Psyr_0848at 961.179 kb on + strand, within Psyr_0848at 961.180 kb on - strand, within Psyr_0848at 961.180 kb on - strand, within Psyr_0848at 961.212 kb on + strand, within Psyr_0848at 961.212 kb on + strand, within Psyr_0848at 961.213 kb on - strand, within Psyr_0848at 961.213 kb on - strand, within Psyr_0848at 961.213 kb on - strand, within Psyr_0848at 961.213 kb on - strand, within Psyr_0848at 961.356 kb on - strandat 961.452 kb on + strandat 961.452 kb on + strandat 961.452 kb on + strandat 961.452 kb on + strandat 961.452 kb on + strandat 961.452 kb on + strandat 961.453 kb on - strandat 961.453 kb on - strandat 961.453 kb on - strandat 961.479 kb on - strandat 961.479 kb on - strandat 961.479 kb on - strandat 961.489 kb on + strandat 961.545 kb on + strandat 961.545 kb on + strandat 961.547 kb on + strandat 961.547 kb on + strandat 961.547 kb on + strandat 961.547 kb on + strandat 961.547 kb on + strandat 961.618 kb on - strandat 961.618 kb on - strandat 961.678 kb on - strandat 961.682 kb on - strandat 961.682 kb on - strandat 961.741 kb on + strand, within Psyr_0849at 961.745 kb on + strand, within Psyr_0849at 961.745 kb on + strand, within Psyr_0849at 961.745 kb on + strand, within Psyr_0849at 961.745 kb on + strand, within Psyr_0849at 961.746 kb on - strand, within Psyr_0849at 961.746 kb on - strand, within Psyr_0849at 961.746 kb on - strand, within Psyr_0849at 961.746 kb on - strand, within Psyr_0849at 961.746 kb on - strand, within Psyr_0849at 961.746 kb on - strand, within Psyr_0849at 961.746 kb on - strand, within Psyr_0849at 961.746 kb on - strand, within Psyr_0849at 961.746 kb on - strand, within Psyr_0849at 961.746 kb on - strand, within Psyr_0849at 961.746 kb on - strand, within Psyr_0849at 961.746 kb on - strand, within Psyr_0849at 961.793 kb on + strand, within Psyr_0849at 961.793 kb on + strand, within Psyr_0849at 961.794 kb on - strand, within Psyr_0849at 961.794 kb on - strand, within Psyr_0849at 961.794 kb on - strand, within Psyr_0849at 961.863 kb on - strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.079 kb on + strand, within Psyr_0849at 962.080 kb on - strand, within Psyr_0849at 962.113 kb on + strand, within Psyr_0849at 962.141 kb on + strand, within Psyr_0849at 962.141 kb on + strand, within Psyr_0849at 962.178 kb on + strand, within Psyr_0849at 962.178 kb on + strand, within Psyr_0849at 962.179 kb on - strand, within Psyr_0849at 962.179 kb on - strand, within Psyr_0849at 962.179 kb on - strand, within Psyr_0849at 962.294 kb on + strand, within Psyr_0849at 962.294 kb on + strand, within Psyr_0849at 962.294 kb on + strand, within Psyr_0849at 962.294 kb on + strand, within Psyr_0849at 962.294 kb on + strand, within Psyr_0849at 962.294 kb on + strand, within Psyr_0849at 962.295 kb on - strand, within Psyr_0849at 962.295 kb on - strand, within Psyr_0849at 962.295 kb on - strand, within Psyr_0849at 962.295 kb on - strand, within Psyr_0849at 962.295 kb on - strand, within Psyr_0849at 962.376 kb on + strand, within Psyr_0849at 962.409 kb on + strandat 962.420 kb on + strandat 962.444 kb on + strandat 962.452 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Lima bean
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959,567 + Psyr_0846 0.81 -2.9
959,568 - Psyr_0846 0.81 -1.9
959,642 + Psyr_0846 0.85 -2.3
959,642 + Psyr_0846 0.85 -2.1
959,666 + Psyr_0846 0.87 -0.8
959,666 + Psyr_0846 0.87 -0.2
959,666 + Psyr_0846 0.87 -1.9
959,666 + Psyr_0846 0.87 -0.3
959,666 + Psyr_0846 0.87 -0.8
959,666 + Psyr_0846 0.87 -3.3
959,667 - Psyr_0846 0.87 -2.3
959,667 - Psyr_0846 0.87 -3.7
959,708 + Psyr_0846 0.89 -3.3
959,709 - Psyr_0846 0.89 -0.7
959,728 + -1.6
959,866 + -1.7
959,867 - -1.3
959,894 + -2.4
959,894 + +1.2
959,894 + +2.4
959,894 + +0.1
959,894 + -0.2
959,894 + +0.1
959,894 + -1.0
959,894 + -0.2
959,895 - -1.3
959,895 - -1.0
959,895 - -1.7
959,895 - +0.1
959,895 - -1.1
959,895 - -1.7
959,895 - -3.3
959,895 - -3.1
959,907 + -0.0
959,976 + Psyr_0847 0.16 -0.4
959,976 + Psyr_0847 0.16 -1.0
959,977 - Psyr_0847 0.16 -1.9
959,977 - Psyr_0847 0.16 -2.5
959,977 - Psyr_0847 0.16 -1.0
959,980 + Psyr_0847 0.16 -3.1
959,980 + Psyr_0847 0.16 -1.5
959,980 + Psyr_0847 0.16 -0.5
959,980 + Psyr_0847 0.16 -0.1
959,980 + Psyr_0847 0.16 -1.6
959,980 + Psyr_0847 0.16 -1.3
959,980 + Psyr_0847 0.16 +0.9
959,980 + Psyr_0847 0.16 -1.3
959,981 - Psyr_0847 0.17 -1.6
959,981 - Psyr_0847 0.17 -2.7
959,981 - Psyr_0847 0.17 -0.3
959,981 - Psyr_0847 0.17 -0.1
959,981 - Psyr_0847 0.17 -1.0
959,981 - Psyr_0847 0.17 -1.7
959,981 - Psyr_0847 0.17 -0.3
960,050 + Psyr_0847 0.31 +0.1
960,050 + Psyr_0847 0.31 -2.5
960,051 - Psyr_0847 0.31 -1.7
960,051 - Psyr_0847 0.31 -2.9
960,257 - Psyr_0847 0.73 -1.1
960,388 + -0.7
960,388 + +1.5
960,397 + -2.2
960,398 - -1.3
960,398 - -0.6
960,398 - -0.1
960,423 + +0.4
960,702 + Psyr_0848 0.26 -1.7
960,702 + Psyr_0848 0.26 -1.0
960,703 - Psyr_0848 0.26 -0.5
960,703 - Psyr_0848 0.26 -2.7
960,703 - Psyr_0848 0.26 -0.3
960,774 + Psyr_0848 0.33 -1.9
960,894 + Psyr_0848 0.45 -0.6
960,936 + Psyr_0848 0.49 -1.7
960,937 - Psyr_0848 0.49 -1.0
960,937 - Psyr_0848 0.49 -1.7
961,107 + Psyr_0848 0.66 -1.1
961,107 + Psyr_0848 0.66 -2.2
961,108 - Psyr_0848 0.66 -1.6
961,108 - Psyr_0848 0.66 +0.3
961,152 + Psyr_0848 0.70 +0.5
961,152 + Psyr_0848 0.70 -1.7
961,152 + Psyr_0848 0.70 +0.5
961,152 + Psyr_0848 0.70 -2.7
961,152 + Psyr_0848 0.70 -2.7
961,152 + Psyr_0848 0.70 +0.8
961,153 - Psyr_0848 0.70 -0.5
961,153 - Psyr_0848 0.70 -1.9
961,153 - Psyr_0848 0.70 -3.1
961,153 - Psyr_0848 0.70 -1.3
961,153 - Psyr_0848 0.70 -2.5
961,153 - Psyr_0848 0.70 -3.0
961,153 - Psyr_0848 0.70 -3.3
961,153 - Psyr_0848 0.70 -2.3
961,179 + Psyr_0848 0.73 -1.7
961,179 + Psyr_0848 0.73 -0.5
961,180 - Psyr_0848 0.73 -1.9
961,180 - Psyr_0848 0.73 -2.2
961,212 + Psyr_0848 0.76 -1.9
961,212 + Psyr_0848 0.76 +1.8
961,213 - Psyr_0848 0.76 -2.3
961,213 - Psyr_0848 0.76 +0.1
961,213 - Psyr_0848 0.76 -2.2
961,213 - Psyr_0848 0.76 -2.3
961,356 - -2.7
961,452 + +0.1
961,452 + +0.6
961,452 + +1.5
961,452 + +0.1
961,452 + +0.2
961,452 + -1.0
961,453 - +1.2
961,453 - +1.0
961,453 - +0.5
961,479 - -0.5
961,479 - -0.4
961,479 - -2.1
961,489 + +0.3
961,545 + +0.2
961,545 + -0.3
961,547 + +0.9
961,547 + -0.3
961,547 + -0.8
961,547 + -0.7
961,547 + -0.4
961,618 - -1.1
961,618 - +1.9
961,678 - +1.0
961,682 - -3.2
961,682 - +1.2
961,741 + Psyr_0849 0.14 -1.7
961,745 + Psyr_0849 0.14 -0.9
961,745 + Psyr_0849 0.14 +2.3
961,745 + Psyr_0849 0.14 -1.7
961,745 + Psyr_0849 0.14 -0.5
961,746 - Psyr_0849 0.14 -0.5
961,746 - Psyr_0849 0.14 -0.5
961,746 - Psyr_0849 0.14 +0.2
961,746 - Psyr_0849 0.14 +0.3
961,746 - Psyr_0849 0.14 -0.1
961,746 - Psyr_0849 0.14 -0.3
961,746 - Psyr_0849 0.14 -0.9
961,746 - Psyr_0849 0.14 -2.4
961,746 - Psyr_0849 0.14 +1.1
961,746 - Psyr_0849 0.14 -1.2
961,746 - Psyr_0849 0.14 +1.4
961,746 - Psyr_0849 0.14 -1.1
961,793 + Psyr_0849 0.20 -1.9
961,793 + Psyr_0849 0.20 +0.3
961,794 - Psyr_0849 0.20 -1.6
961,794 - Psyr_0849 0.20 -2.4
961,794 - Psyr_0849 0.20 -0.5
961,863 - Psyr_0849 0.28 -2.2
962,075 + Psyr_0849 0.53 -2.2
962,075 + Psyr_0849 0.53 +2.5
962,075 + Psyr_0849 0.53 -0.9
962,075 + Psyr_0849 0.53 -0.7
962,075 + Psyr_0849 0.53 +0.8
962,075 + Psyr_0849 0.53 +0.1
962,075 + Psyr_0849 0.53 -1.0
962,075 + Psyr_0849 0.53 -1.7
962,075 + Psyr_0849 0.53 -2.3
962,075 + Psyr_0849 0.53 +0.9
962,075 + Psyr_0849 0.53 -0.2
962,075 + Psyr_0849 0.53 -1.5
962,075 + Psyr_0849 0.53 -2.1
962,075 + Psyr_0849 0.53 -1.1
962,075 + Psyr_0849 0.53 +1.5
962,075 + Psyr_0849 0.53 +0.5
962,075 + Psyr_0849 0.53 -2.2
962,075 + Psyr_0849 0.53 -1.1
962,075 + Psyr_0849 0.53 +0.0
962,076 - Psyr_0849 0.53 -1.3
962,076 - Psyr_0849 0.53 +0.5
962,076 - Psyr_0849 0.53 -1.5
962,076 - Psyr_0849 0.53 -1.0
962,076 - Psyr_0849 0.53 -0.5
962,076 - Psyr_0849 0.53 -1.1
962,076 - Psyr_0849 0.53 -2.6
962,076 - Psyr_0849 0.53 -1.7
962,076 - Psyr_0849 0.53 -0.3
962,076 - Psyr_0849 0.53 -0.5
962,076 - Psyr_0849 0.53 -1.5
962,076 - Psyr_0849 0.53 -0.6
962,076 - Psyr_0849 0.53 -0.4
962,076 - Psyr_0849 0.53 -0.5
962,076 - Psyr_0849 0.53 -0.3
962,076 - Psyr_0849 0.53 +0.1
962,076 - Psyr_0849 0.53 -1.7
962,076 - Psyr_0849 0.53 -1.1
962,079 + Psyr_0849 0.54 -0.9
962,080 - Psyr_0849 0.54 -0.5
962,113 + Psyr_0849 0.58 +0.5
962,141 + Psyr_0849 0.61 +0.3
962,141 + Psyr_0849 0.61 -0.9
962,178 + Psyr_0849 0.65 -1.0
962,178 + Psyr_0849 0.65 -2.0
962,179 - Psyr_0849 0.65 -0.5
962,179 - Psyr_0849 0.65 -0.5
962,179 - Psyr_0849 0.65 -0.1
962,294 + Psyr_0849 0.79 -0.1
962,294 + Psyr_0849 0.79 -1.1
962,294 + Psyr_0849 0.79 +0.0
962,294 + Psyr_0849 0.79 +1.5
962,294 + Psyr_0849 0.79 +1.5
962,294 + Psyr_0849 0.79 -0.3
962,295 - Psyr_0849 0.79 -0.5
962,295 - Psyr_0849 0.79 +1.0
962,295 - Psyr_0849 0.79 -1.1
962,295 - Psyr_0849 0.79 -1.9
962,295 - Psyr_0849 0.79 -0.1
962,376 + Psyr_0849 0.89 +2.4
962,409 + -2.9
962,420 + +0.5
962,444 + +0.4
962,452 - -1.7

Or see this region's nucleotide sequence