Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0534

Experiment: apoplastic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0532 and Psyr_0533 are separated by 31 nucleotidesPsyr_0533 and Psyr_0534 overlap by 11 nucleotidesPsyr_0534 and Psyr_0535 are separated by 48 nucleotidesPsyr_0535 and Psyr_0536 overlap by 2 nucleotides Psyr_0532: Psyr_0532 - conserved hypothetical protein, at 601,182 to 602,138 _0532 Psyr_0533: Psyr_0533 - conserved hypothetical protein, at 602,170 to 602,943 _0533 Psyr_0534: Psyr_0534 - membrane protein, putative, at 602,933 to 604,102 _0534 Psyr_0535: Psyr_0535 - toluene tolerance protein, putative, at 604,151 to 604,906 _0535 Psyr_0536: Psyr_0536 - ABC transporter, transmembrane region:ABC transporter, at 604,905 to 606,707 _0536 Position (kb) 602 603 604 605Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 602.000 kb on + strand, within Psyr_0532at 602.030 kb on + strand, within Psyr_0532at 602.144 kb on + strandat 602.151 kb on - strandat 602.151 kb on - strandat 602.151 kb on - strandat 602.177 kb on + strandat 602.177 kb on + strandat 602.199 kb on + strandat 602.416 kb on + strand, within Psyr_0533at 602.417 kb on - strand, within Psyr_0533at 602.417 kb on - strand, within Psyr_0533at 602.548 kb on + strand, within Psyr_0533at 602.548 kb on + strand, within Psyr_0533at 602.548 kb on + strand, within Psyr_0533at 602.548 kb on + strand, within Psyr_0533at 602.549 kb on - strand, within Psyr_0533at 602.549 kb on - strand, within Psyr_0533at 602.579 kb on - strand, within Psyr_0533at 602.579 kb on - strand, within Psyr_0533at 602.696 kb on - strand, within Psyr_0533at 602.696 kb on - strand, within Psyr_0533at 602.750 kb on + strand, within Psyr_0533at 602.751 kb on - strand, within Psyr_0533at 602.910 kb on - strandat 602.910 kb on - strandat 602.912 kb on + strandat 602.912 kb on + strandat 602.912 kb on + strandat 602.912 kb on + strandat 602.913 kb on - strandat 602.913 kb on - strandat 602.929 kb on - strandat 602.929 kb on - strandat 602.929 kb on - strandat 602.931 kb on + strandat 602.931 kb on + strandat 602.931 kb on + strandat 602.932 kb on - strandat 602.932 kb on - strandat 602.949 kb on + strandat 602.970 kb on + strandat 602.970 kb on + strandat 602.970 kb on + strandat 602.970 kb on + strandat 602.970 kb on + strandat 602.970 kb on + strandat 602.971 kb on - strandat 602.971 kb on - strandat 602.971 kb on - strandat 602.971 kb on - strandat 602.971 kb on - strandat 602.971 kb on - strandat 602.971 kb on - strandat 602.971 kb on - strandat 602.971 kb on - strandat 602.971 kb on - strandat 602.971 kb on - strandat 602.978 kb on + strandat 602.978 kb on + strandat 602.978 kb on + strandat 602.978 kb on + strandat 602.978 kb on + strandat 602.978 kb on + strandat 602.978 kb on + strandat 602.979 kb on - strandat 602.979 kb on - strandat 602.979 kb on - strandat 602.979 kb on - strandat 602.979 kb on - strandat 602.979 kb on - strandat 603.056 kb on + strand, within Psyr_0534at 603.056 kb on + strand, within Psyr_0534at 603.057 kb on - strand, within Psyr_0534at 603.057 kb on - strand, within Psyr_0534at 603.057 kb on - strand, within Psyr_0534at 603.057 kb on - strand, within Psyr_0534at 603.198 kb on - strand, within Psyr_0534at 603.200 kb on + strand, within Psyr_0534at 603.200 kb on + strand, within Psyr_0534at 603.200 kb on + strand, within Psyr_0534at 603.200 kb on + strand, within Psyr_0534at 603.200 kb on + strand, within Psyr_0534at 603.200 kb on + strand, within Psyr_0534at 603.201 kb on - strand, within Psyr_0534at 603.201 kb on - strand, within Psyr_0534at 603.201 kb on - strand, within Psyr_0534at 603.201 kb on - strand, within Psyr_0534at 603.201 kb on - strand, within Psyr_0534at 603.201 kb on - strand, within Psyr_0534at 603.201 kb on - strand, within Psyr_0534at 603.215 kb on + strand, within Psyr_0534at 603.215 kb on + strand, within Psyr_0534at 603.215 kb on + strand, within Psyr_0534at 603.215 kb on + strand, within Psyr_0534at 603.215 kb on + strand, within Psyr_0534at 603.215 kb on + strand, within Psyr_0534at 603.215 kb on + strand, within Psyr_0534at 603.216 kb on - strand, within Psyr_0534at 603.216 kb on - strand, within Psyr_0534at 603.216 kb on - strand, within Psyr_0534at 603.216 kb on - strand, within Psyr_0534at 603.216 kb on - strand, within Psyr_0534at 603.216 kb on - strand, within Psyr_0534at 603.216 kb on - strand, within Psyr_0534at 603.306 kb on + strand, within Psyr_0534at 603.306 kb on + strand, within Psyr_0534at 603.306 kb on + strand, within Psyr_0534at 603.306 kb on + strand, within Psyr_0534at 603.306 kb on + strand, within Psyr_0534at 603.307 kb on - strand, within Psyr_0534at 603.307 kb on - strand, within Psyr_0534at 603.307 kb on - strand, within Psyr_0534at 603.307 kb on - strand, within Psyr_0534at 603.307 kb on - strand, within Psyr_0534at 603.307 kb on - strand, within Psyr_0534at 603.314 kb on + strand, within Psyr_0534at 603.314 kb on + strand, within Psyr_0534at 603.314 kb on + strand, within Psyr_0534at 603.314 kb on + strand, within Psyr_0534at 603.314 kb on + strand, within Psyr_0534at 603.314 kb on + strand, within Psyr_0534at 603.314 kb on + strand, within Psyr_0534at 603.314 kb on + strand, within Psyr_0534at 603.314 kb on + strand, within Psyr_0534at 603.315 kb on - strand, within Psyr_0534at 603.315 kb on - strand, within Psyr_0534at 603.315 kb on - strand, within Psyr_0534at 603.315 kb on - strand, within Psyr_0534at 603.315 kb on - strand, within Psyr_0534at 603.315 kb on - strand, within Psyr_0534at 603.315 kb on - strand, within Psyr_0534at 603.315 kb on - strand, within Psyr_0534at 603.410 kb on + strand, within Psyr_0534at 603.410 kb on + strand, within Psyr_0534at 603.411 kb on - strand, within Psyr_0534at 603.411 kb on - strand, within Psyr_0534at 603.411 kb on - strand, within Psyr_0534at 603.411 kb on - strand, within Psyr_0534at 603.542 kb on - strand, within Psyr_0534at 603.794 kb on + strand, within Psyr_0534at 603.794 kb on + strand, within Psyr_0534at 603.794 kb on + strand, within Psyr_0534at 603.795 kb on - strand, within Psyr_0534at 603.795 kb on - strand, within Psyr_0534at 603.795 kb on - strand, within Psyr_0534at 603.795 kb on - strand, within Psyr_0534at 603.795 kb on - strand, within Psyr_0534at 603.844 kb on + strand, within Psyr_0534at 603.844 kb on + strand, within Psyr_0534at 603.866 kb on + strand, within Psyr_0534at 603.867 kb on - strand, within Psyr_0534at 603.867 kb on - strand, within Psyr_0534at 603.867 kb on - strand, within Psyr_0534at 603.867 kb on - strand, within Psyr_0534at 603.867 kb on - strand, within Psyr_0534at 603.867 kb on - strand, within Psyr_0534at 603.867 kb on - strand, within Psyr_0534at 603.957 kb on - strand, within Psyr_0534at 603.957 kb on - strand, within Psyr_0534at 603.982 kb on + strand, within Psyr_0534at 603.982 kb on + strand, within Psyr_0534at 603.982 kb on + strand, within Psyr_0534at 603.982 kb on + strand, within Psyr_0534at 604.101 kb on - strandat 604.101 kb on - strandat 604.101 kb on - strandat 604.206 kb on + strandat 604.206 kb on + strandat 604.206 kb on + strandat 604.404 kb on + strand, within Psyr_0535at 604.404 kb on + strand, within Psyr_0535at 604.404 kb on + strand, within Psyr_0535at 604.518 kb on + strand, within Psyr_0535at 604.518 kb on + strand, within Psyr_0535at 604.523 kb on + strand, within Psyr_0535at 604.565 kb on + strand, within Psyr_0535at 604.706 kb on + strand, within Psyr_0535at 604.736 kb on + strand, within Psyr_0535at 604.832 kb on + strandat 604.870 kb on + strandat 604.870 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Lima bean
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602,000 + Psyr_0532 0.85 -0.0
602,030 + Psyr_0532 0.89 -1.1
602,144 + -0.4
602,151 - +0.2
602,151 - +1.6
602,151 - -0.5
602,177 + -2.6
602,177 + -1.4
602,199 + -0.0
602,416 + Psyr_0533 0.32 -2.0
602,417 - Psyr_0533 0.32 -1.0
602,417 - Psyr_0533 0.32 -1.3
602,548 + Psyr_0533 0.49 -0.3
602,548 + Psyr_0533 0.49 +1.3
602,548 + Psyr_0533 0.49 -0.8
602,548 + Psyr_0533 0.49 +0.9
602,549 - Psyr_0533 0.49 +0.6
602,549 - Psyr_0533 0.49 -0.9
602,579 - Psyr_0533 0.53 -3.0
602,579 - Psyr_0533 0.53 -0.6
602,696 - Psyr_0533 0.68 +0.6
602,696 - Psyr_0533 0.68 -3.2
602,750 + Psyr_0533 0.75 +0.6
602,751 - Psyr_0533 0.75 +1.0
602,910 - -1.0
602,910 - -1.8
602,912 + -0.9
602,912 + +2.2
602,912 + -1.4
602,912 + -0.9
602,913 - -1.9
602,913 - -2.8
602,929 - -0.3
602,929 - +0.2
602,929 - +2.1
602,931 + -0.8
602,931 + -1.2
602,931 + -1.2
602,932 - -1.9
602,932 - -0.5
602,949 + -0.8
602,970 + -2.2
602,970 + -1.1
602,970 + -0.3
602,970 + -3.2
602,970 + -1.4
602,970 + -3.1
602,971 - -0.0
602,971 - +0.2
602,971 - -0.4
602,971 - -0.1
602,971 - -1.5
602,971 - -1.6
602,971 - +2.9
602,971 - -1.1
602,971 - -2.1
602,971 - -0.8
602,971 - -0.8
602,978 + -2.7
602,978 + -0.7
602,978 + -0.6
602,978 + -1.4
602,978 + -1.1
602,978 + +1.1
602,978 + +0.6
602,979 - -0.3
602,979 - -1.1
602,979 - -1.5
602,979 - -1.9
602,979 - -1.8
602,979 - +0.2
603,056 + Psyr_0534 0.11 -1.2
603,056 + Psyr_0534 0.11 -2.2
603,057 - Psyr_0534 0.11 -2.3
603,057 - Psyr_0534 0.11 -1.8
603,057 - Psyr_0534 0.11 -1.2
603,057 - Psyr_0534 0.11 +0.6
603,198 - Psyr_0534 0.23 -3.2
603,200 + Psyr_0534 0.23 -1.6
603,200 + Psyr_0534 0.23 +0.2
603,200 + Psyr_0534 0.23 -1.0
603,200 + Psyr_0534 0.23 -1.8
603,200 + Psyr_0534 0.23 -2.2
603,200 + Psyr_0534 0.23 -0.9
603,201 - Psyr_0534 0.23 -2.7
603,201 - Psyr_0534 0.23 -0.3
603,201 - Psyr_0534 0.23 +0.2
603,201 - Psyr_0534 0.23 -1.0
603,201 - Psyr_0534 0.23 -1.2
603,201 - Psyr_0534 0.23 +3.7
603,201 - Psyr_0534 0.23 -0.4
603,215 + Psyr_0534 0.24 -2.5
603,215 + Psyr_0534 0.24 +0.2
603,215 + Psyr_0534 0.24 -0.5
603,215 + Psyr_0534 0.24 -0.4
603,215 + Psyr_0534 0.24 -0.6
603,215 + Psyr_0534 0.24 -1.4
603,215 + Psyr_0534 0.24 -1.4
603,216 - Psyr_0534 0.24 -0.0
603,216 - Psyr_0534 0.24 +0.6
603,216 - Psyr_0534 0.24 -1.0
603,216 - Psyr_0534 0.24 -0.4
603,216 - Psyr_0534 0.24 -2.0
603,216 - Psyr_0534 0.24 -1.4
603,216 - Psyr_0534 0.24 +0.4
603,306 + Psyr_0534 0.32 -1.0
603,306 + Psyr_0534 0.32 -2.9
603,306 + Psyr_0534 0.32 -0.3
603,306 + Psyr_0534 0.32 -0.0
603,306 + Psyr_0534 0.32 -1.0
603,307 - Psyr_0534 0.32 -0.0
603,307 - Psyr_0534 0.32 -2.0
603,307 - Psyr_0534 0.32 -0.6
603,307 - Psyr_0534 0.32 -2.2
603,307 - Psyr_0534 0.32 -0.8
603,307 - Psyr_0534 0.32 +0.0
603,314 + Psyr_0534 0.33 -0.5
603,314 + Psyr_0534 0.33 -2.5
603,314 + Psyr_0534 0.33 -0.4
603,314 + Psyr_0534 0.33 -1.7
603,314 + Psyr_0534 0.33 -0.8
603,314 + Psyr_0534 0.33 -1.3
603,314 + Psyr_0534 0.33 -1.2
603,314 + Psyr_0534 0.33 -3.2
603,314 + Psyr_0534 0.33 +0.2
603,315 - Psyr_0534 0.33 -2.4
603,315 - Psyr_0534 0.33 +0.2
603,315 - Psyr_0534 0.33 -1.2
603,315 - Psyr_0534 0.33 +0.0
603,315 - Psyr_0534 0.33 -1.6
603,315 - Psyr_0534 0.33 -1.2
603,315 - Psyr_0534 0.33 -2.0
603,315 - Psyr_0534 0.33 -0.8
603,410 + Psyr_0534 0.41 -4.0
603,410 + Psyr_0534 0.41 -1.9
603,411 - Psyr_0534 0.41 -1.5
603,411 - Psyr_0534 0.41 -1.0
603,411 - Psyr_0534 0.41 +0.4
603,411 - Psyr_0534 0.41 +1.4
603,542 - Psyr_0534 0.52 -4.0
603,794 + Psyr_0534 0.74 -1.4
603,794 + Psyr_0534 0.74 -2.9
603,794 + Psyr_0534 0.74 +0.1
603,795 - Psyr_0534 0.74 -3.2
603,795 - Psyr_0534 0.74 -2.8
603,795 - Psyr_0534 0.74 -0.7
603,795 - Psyr_0534 0.74 -2.1
603,795 - Psyr_0534 0.74 -3.9
603,844 + Psyr_0534 0.78 -0.4
603,844 + Psyr_0534 0.78 -1.9
603,866 + Psyr_0534 0.80 -3.4
603,867 - Psyr_0534 0.80 -2.5
603,867 - Psyr_0534 0.80 -2.2
603,867 - Psyr_0534 0.80 -0.4
603,867 - Psyr_0534 0.80 +0.7
603,867 - Psyr_0534 0.80 -1.1
603,867 - Psyr_0534 0.80 -0.8
603,867 - Psyr_0534 0.80 -0.8
603,957 - Psyr_0534 0.88 -1.1
603,957 - Psyr_0534 0.88 -1.0
603,982 + Psyr_0534 0.90 -3.9
603,982 + Psyr_0534 0.90 -0.0
603,982 + Psyr_0534 0.90 +1.2
603,982 + Psyr_0534 0.90 -0.4
604,101 - +1.6
604,101 - -0.1
604,101 - +0.1
604,206 + +2.0
604,206 + -0.6
604,206 + +1.0
604,404 + Psyr_0535 0.33 +1.0
604,404 + Psyr_0535 0.33 +1.6
604,404 + Psyr_0535 0.33 -2.2
604,518 + Psyr_0535 0.49 -2.1
604,518 + Psyr_0535 0.49 -0.4
604,523 + Psyr_0535 0.49 +0.2
604,565 + Psyr_0535 0.55 -2.1
604,706 + Psyr_0535 0.73 -0.8
604,736 + Psyr_0535 0.77 -1.6
604,832 + -1.2
604,870 + -2.9
604,870 + -0.2

Or see this region's nucleotide sequence