Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0529 and Psyr_0530 overlap by 1 nucleotides Psyr_0530 and Psyr_0531 overlap by 4 nucleotides Psyr_0531 and Psyr_0532 are separated by 30 nucleotides
Psyr_0529: Psyr_0529 - Glycosyl transferase, group 1, at 597,719 to 598,849
_0529
Psyr_0530: Psyr_0530 - Mig-14, at 598,849 to 599,745
_0530
Psyr_0531: Psyr_0531 - LmbE-like protein, at 599,742 to 601,151
_0531
Psyr_0532: Psyr_0532 - conserved hypothetical protein, at 601,182 to 602,138
_0532
Position (kb) 599
600
601
602 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 598.799 kb on - strand at 599.218 kb on - strand, within Psyr_0530 at 599.917 kb on - strand, within Psyr_0531 at 599.941 kb on - strand, within Psyr_0531 at 600.013 kb on + strand, within Psyr_0531 at 600.014 kb on - strand, within Psyr_0531 at 600.824 kb on - strand, within Psyr_0531 at 600.834 kb on + strand, within Psyr_0531 at 601.166 kb on + strand at 601.167 kb on - strand at 601.192 kb on + strand at 601.192 kb on + strand at 601.193 kb on - strand at 601.193 kb on - strand at 601.237 kb on - strand at 601.441 kb on - strand, within Psyr_0532 at 601.449 kb on + strand, within Psyr_0532 at 601.449 kb on + strand, within Psyr_0532 at 601.449 kb on + strand, within Psyr_0532 at 601.450 kb on - strand, within Psyr_0532 at 601.450 kb on - strand, within Psyr_0532 at 601.450 kb on - strand, within Psyr_0532 at 601.450 kb on - strand, within Psyr_0532 at 601.465 kb on - strand, within Psyr_0532 at 601.465 kb on - strand, within Psyr_0532 at 601.465 kb on - strand, within Psyr_0532 at 601.588 kb on - strand, within Psyr_0532 at 601.669 kb on - strand, within Psyr_0532 at 601.750 kb on - strand, within Psyr_0532 at 601.750 kb on - strand, within Psyr_0532 at 601.809 kb on + strand, within Psyr_0532 at 601.809 kb on + strand, within Psyr_0532 at 601.809 kb on + strand, within Psyr_0532 at 601.809 kb on + strand, within Psyr_0532 at 601.810 kb on - strand, within Psyr_0532 at 601.810 kb on - strand, within Psyr_0532 at 601.810 kb on - strand, within Psyr_0532 at 602.000 kb on + strand, within Psyr_0532 at 602.030 kb on + strand, within Psyr_0532 at 602.144 kb on + strand at 602.151 kb on - strand at 602.151 kb on - strand at 602.151 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 598,799 - +0.6 599,218 - Psyr_0530 0.41 -2.0 599,917 - Psyr_0531 0.12 -0.3 599,941 - Psyr_0531 0.14 -2.3 600,013 + Psyr_0531 0.19 -0.4 600,014 - Psyr_0531 0.19 -1.4 600,824 - Psyr_0531 0.77 -2.5 600,834 + Psyr_0531 0.77 +3.0 601,166 + -0.1 601,167 - +0.4 601,192 + -2.3 601,192 + -1.4 601,193 - -2.8 601,193 - -1.6 601,237 - -1.6 601,441 - Psyr_0532 0.27 -1.4 601,449 + Psyr_0532 0.28 -1.6 601,449 + Psyr_0532 0.28 -2.7 601,449 + Psyr_0532 0.28 -1.6 601,450 - Psyr_0532 0.28 -0.0 601,450 - Psyr_0532 0.28 -1.1 601,450 - Psyr_0532 0.28 -1.2 601,450 - Psyr_0532 0.28 +1.6 601,465 - Psyr_0532 0.30 -1.9 601,465 - Psyr_0532 0.30 +0.3 601,465 - Psyr_0532 0.30 -1.7 601,588 - Psyr_0532 0.42 -1.4 601,669 - Psyr_0532 0.51 -0.4 601,750 - Psyr_0532 0.59 -0.7 601,750 - Psyr_0532 0.59 -0.0 601,809 + Psyr_0532 0.66 -3.1 601,809 + Psyr_0532 0.66 -0.0 601,809 + Psyr_0532 0.66 -2.2 601,809 + Psyr_0532 0.66 -2.0 601,810 - Psyr_0532 0.66 -0.2 601,810 - Psyr_0532 0.66 -0.6 601,810 - Psyr_0532 0.66 +0.6 602,000 + Psyr_0532 0.85 -0.0 602,030 + Psyr_0532 0.89 -1.1 602,144 + -0.4 602,151 - +0.2 602,151 - +1.6 602,151 - -0.5
Or see this region's nucleotide sequence