Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0454

Experiment: apoplastic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0452 and Psyr_0453 are separated by 106 nucleotidesPsyr_0453 and Psyr_0454 are separated by 131 nucleotidesPsyr_0454 and Psyr_0455 are separated by 209 nucleotides Psyr_0452: Psyr_0452 - HylII, at 487,976 to 488,590 _0452 Psyr_0453: Psyr_0453 - 16S rRNA m(3)U-1498 methyltransferase, at 488,697 to 489,416 _0453 Psyr_0454: Psyr_0454 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme, at 489,548 to 490,954 _0454 Psyr_0455: Psyr_0455 - Amine oxidase, at 491,164 to 493,038 _0455 Position (kb) 489 490 491Strain fitness (log2 ratio) -2 -1 0 1 2at 488.579 kb on + strandat 488.579 kb on + strandat 488.579 kb on + strandat 488.580 kb on - strandat 488.580 kb on - strandat 489.098 kb on + strand, within Psyr_0453at 489.099 kb on - strand, within Psyr_0453at 489.099 kb on - strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.340 kb on + strand, within Psyr_0453at 489.341 kb on - strand, within Psyr_0453at 489.341 kb on - strand, within Psyr_0453at 489.341 kb on - strand, within Psyr_0453at 489.341 kb on - strand, within Psyr_0453at 489.341 kb on - strand, within Psyr_0453at 489.341 kb on - strand, within Psyr_0453at 489.549 kb on + strandat 489.678 kb on + strandat 489.679 kb on - strandat 489.679 kb on - strandat 489.694 kb on - strand, within Psyr_0454at 489.694 kb on - strand, within Psyr_0454at 489.694 kb on - strand, within Psyr_0454at 489.694 kb on - strand, within Psyr_0454at 489.694 kb on - strand, within Psyr_0454at 489.991 kb on - strand, within Psyr_0454at 489.991 kb on - strand, within Psyr_0454at 489.991 kb on - strand, within Psyr_0454at 489.991 kb on - strand, within Psyr_0454at 490.035 kb on + strand, within Psyr_0454at 490.035 kb on + strand, within Psyr_0454at 490.048 kb on - strand, within Psyr_0454at 490.087 kb on - strand, within Psyr_0454at 490.087 kb on - strand, within Psyr_0454at 490.245 kb on + strand, within Psyr_0454at 490.245 kb on + strand, within Psyr_0454at 490.257 kb on + strand, within Psyr_0454at 490.257 kb on + strand, within Psyr_0454at 490.257 kb on + strand, within Psyr_0454at 490.258 kb on - strand, within Psyr_0454at 490.258 kb on - strand, within Psyr_0454at 490.258 kb on - strand, within Psyr_0454at 490.258 kb on - strand, within Psyr_0454at 490.258 kb on - strand, within Psyr_0454at 490.258 kb on - strand, within Psyr_0454at 490.402 kb on - strand, within Psyr_0454at 490.450 kb on - strand, within Psyr_0454at 491.010 kb on + strandat 491.051 kb on - strandat 491.077 kb on + strandat 491.133 kb on + strandat 491.134 kb on - strandat 491.134 kb on - strandat 491.142 kb on + strandat 491.143 kb on - strandat 491.199 kb on - strandat 491.293 kb on + strandat 491.294 kb on - strandat 491.479 kb on + strand, within Psyr_0455at 491.480 kb on - strand, within Psyr_0455at 491.480 kb on - strand, within Psyr_0455at 491.497 kb on + strand, within Psyr_0455at 491.497 kb on + strand, within Psyr_0455at 491.497 kb on + strand, within Psyr_0455at 491.497 kb on + strand, within Psyr_0455at 491.497 kb on + strand, within Psyr_0455at 491.497 kb on + strand, within Psyr_0455at 491.497 kb on + strand, within Psyr_0455at 491.498 kb on - strand, within Psyr_0455at 491.498 kb on - strand, within Psyr_0455at 491.498 kb on - strand, within Psyr_0455at 491.498 kb on - strand, within Psyr_0455at 491.498 kb on - strand, within Psyr_0455at 491.498 kb on - strand, within Psyr_0455at 491.498 kb on - strand, within Psyr_0455at 491.498 kb on - strand, within Psyr_0455at 491.557 kb on + strand, within Psyr_0455at 491.558 kb on - strand, within Psyr_0455at 491.558 kb on - strand, within Psyr_0455at 491.756 kb on - strand, within Psyr_0455at 491.780 kb on - strand, within Psyr_0455at 491.947 kb on + strand, within Psyr_0455at 491.947 kb on + strand, within Psyr_0455at 491.947 kb on + strand, within Psyr_0455at 491.947 kb on + strand, within Psyr_0455at 491.947 kb on + strand, within Psyr_0455at 491.948 kb on - strand, within Psyr_0455

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Lima bean
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488,579 + +0.6
488,579 + -0.9
488,579 + +0.9
488,580 - +0.4
488,580 - +0.7
489,098 + Psyr_0453 0.56 +0.4
489,099 - Psyr_0453 0.56 -0.1
489,099 - Psyr_0453 0.56 +0.1
489,340 + Psyr_0453 0.89 +0.3
489,340 + Psyr_0453 0.89 -2.5
489,340 + Psyr_0453 0.89 +0.2
489,340 + Psyr_0453 0.89 -0.6
489,340 + Psyr_0453 0.89 +0.1
489,340 + Psyr_0453 0.89 -0.1
489,340 + Psyr_0453 0.89 +0.1
489,340 + Psyr_0453 0.89 +0.1
489,341 - Psyr_0453 0.89 -1.5
489,341 - Psyr_0453 0.89 +0.1
489,341 - Psyr_0453 0.89 +0.6
489,341 - Psyr_0453 0.89 +0.2
489,341 - Psyr_0453 0.89 +1.8
489,341 - Psyr_0453 0.89 +1.2
489,549 + +2.5
489,678 + -1.5
489,679 - +0.1
489,679 - -0.4
489,694 - Psyr_0454 0.10 -2.2
489,694 - Psyr_0454 0.10 -2.2
489,694 - Psyr_0454 0.10 +0.1
489,694 - Psyr_0454 0.10 +0.8
489,694 - Psyr_0454 0.10 -1.8
489,991 - Psyr_0454 0.31 -0.9
489,991 - Psyr_0454 0.31 +0.3
489,991 - Psyr_0454 0.31 -2.1
489,991 - Psyr_0454 0.31 -0.9
490,035 + Psyr_0454 0.35 +0.8
490,035 + Psyr_0454 0.35 -1.4
490,048 - Psyr_0454 0.36 -0.4
490,087 - Psyr_0454 0.38 -1.4
490,087 - Psyr_0454 0.38 -2.2
490,245 + Psyr_0454 0.50 -0.1
490,245 + Psyr_0454 0.50 -0.7
490,257 + Psyr_0454 0.50 -2.1
490,257 + Psyr_0454 0.50 +0.4
490,257 + Psyr_0454 0.50 -2.1
490,258 - Psyr_0454 0.50 -0.4
490,258 - Psyr_0454 0.50 -0.4
490,258 - Psyr_0454 0.50 -2.5
490,258 - Psyr_0454 0.50 -1.7
490,258 - Psyr_0454 0.50 +0.3
490,258 - Psyr_0454 0.50 +0.6
490,402 - Psyr_0454 0.61 -1.1
490,450 - Psyr_0454 0.64 +0.1
491,010 + +1.9
491,051 - +0.6
491,077 + +1.7
491,133 + +0.3
491,134 - -1.5
491,134 - +1.6
491,142 + +0.3
491,143 - -0.2
491,199 - +2.3
491,293 + +0.9
491,294 - +0.0
491,479 + Psyr_0455 0.17 +0.8
491,480 - Psyr_0455 0.17 -0.1
491,480 - Psyr_0455 0.17 -1.6
491,497 + Psyr_0455 0.18 -0.4
491,497 + Psyr_0455 0.18 +1.1
491,497 + Psyr_0455 0.18 +0.8
491,497 + Psyr_0455 0.18 +1.6
491,497 + Psyr_0455 0.18 -0.9
491,497 + Psyr_0455 0.18 -1.1
491,497 + Psyr_0455 0.18 -0.5
491,498 - Psyr_0455 0.18 +0.4
491,498 - Psyr_0455 0.18 -0.8
491,498 - Psyr_0455 0.18 +0.8
491,498 - Psyr_0455 0.18 -0.8
491,498 - Psyr_0455 0.18 -1.5
491,498 - Psyr_0455 0.18 -0.8
491,498 - Psyr_0455 0.18 +0.9
491,498 - Psyr_0455 0.18 -1.8
491,557 + Psyr_0455 0.21 -0.6
491,558 - Psyr_0455 0.21 +0.1
491,558 - Psyr_0455 0.21 -0.2
491,756 - Psyr_0455 0.32 +0.1
491,780 - Psyr_0455 0.33 -1.5
491,947 + Psyr_0455 0.42 +0.9
491,947 + Psyr_0455 0.42 +0.6
491,947 + Psyr_0455 0.42 -0.0
491,947 + Psyr_0455 0.42 -1.2
491,947 + Psyr_0455 0.42 +0.8
491,948 - Psyr_0455 0.42 -1.4

Or see this region's nucleotide sequence