Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0371 and Psyr_0372 overlap by 4 nucleotides Psyr_0372 and Psyr_0373 overlap by 1 nucleotides Psyr_0373 and Psyr_0374 are separated by 433 nucleotides
Psyr_0371: Psyr_0371 - conserved hypothetical protein, at 395,102 to 396,481
_0371
Psyr_0372: Psyr_0372 - CDS, at 396,478 to 396,747
_0372
Psyr_0373: Psyr_0373 - CDS, at 396,747 to 397,178
_0373
Psyr_0374: Psyr_0374 - Phosphorylase, at 397,612 to 400,062
_0374
Position (kb) 396
397 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 395.688 kb on + strand, within Psyr_0371 at 395.688 kb on + strand, within Psyr_0371 at 395.688 kb on + strand, within Psyr_0371 at 395.688 kb on + strand, within Psyr_0371 at 395.688 kb on + strand, within Psyr_0371 at 395.689 kb on - strand, within Psyr_0371 at 395.830 kb on - strand, within Psyr_0371 at 396.165 kb on + strand, within Psyr_0371 at 396.165 kb on + strand, within Psyr_0371 at 396.165 kb on + strand, within Psyr_0371 at 396.165 kb on + strand, within Psyr_0371 at 396.166 kb on - strand, within Psyr_0371 at 396.166 kb on - strand, within Psyr_0371 at 396.238 kb on - strand, within Psyr_0371 at 396.238 kb on - strand, within Psyr_0371 at 396.238 kb on - strand, within Psyr_0371 at 396.272 kb on + strand, within Psyr_0371 at 396.272 kb on + strand, within Psyr_0371 at 396.272 kb on + strand, within Psyr_0371 at 396.272 kb on + strand, within Psyr_0371 at 396.272 kb on + strand, within Psyr_0371 at 396.273 kb on - strand, within Psyr_0371 at 396.273 kb on - strand, within Psyr_0371 at 396.273 kb on - strand, within Psyr_0371 at 396.273 kb on - strand, within Psyr_0371 at 396.273 kb on - strand, within Psyr_0371 at 396.273 kb on - strand, within Psyr_0371 at 396.273 kb on - strand, within Psyr_0371 at 396.482 kb on - strand at 396.566 kb on + strand, within Psyr_0372 at 396.567 kb on - strand, within Psyr_0372 at 396.588 kb on + strand, within Psyr_0372 at 396.589 kb on - strand, within Psyr_0372 at 396.589 kb on - strand, within Psyr_0372 at 397.123 kb on + strand, within Psyr_0373 at 397.123 kb on + strand, within Psyr_0373 at 397.124 kb on - strand, within Psyr_0373 at 397.140 kb on + strand at 397.140 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.224 kb on + strand at 397.224 kb on + strand at 397.224 kb on + strand at 397.224 kb on + strand at 397.224 kb on + strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.226 kb on + strand at 397.226 kb on + strand at 397.226 kb on + strand at 397.226 kb on + strand at 397.226 kb on + strand at 397.226 kb on + strand at 397.227 kb on - strand at 397.227 kb on - strand at 397.227 kb on - strand at 397.227 kb on - strand at 397.227 kb on - strand at 397.227 kb on - strand at 397.249 kb on + strand at 397.257 kb on + strand at 397.258 kb on - strand at 397.258 kb on - strand at 397.335 kb on - strand at 397.488 kb on + strand at 397.489 kb on - strand at 397.590 kb on + strand at 397.591 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 395,688 + Psyr_0371 0.42 -0.7 395,688 + Psyr_0371 0.42 +0.7 395,688 + Psyr_0371 0.42 -2.0 395,688 + Psyr_0371 0.42 +1.0 395,688 + Psyr_0371 0.42 -0.8 395,689 - Psyr_0371 0.43 +0.5 395,830 - Psyr_0371 0.53 -0.1 396,165 + Psyr_0371 0.77 -1.9 396,165 + Psyr_0371 0.77 +0.3 396,165 + Psyr_0371 0.77 +0.7 396,165 + Psyr_0371 0.77 +0.7 396,166 - Psyr_0371 0.77 +1.3 396,166 - Psyr_0371 0.77 -0.0 396,238 - Psyr_0371 0.82 -0.7 396,238 - Psyr_0371 0.82 +0.2 396,238 - Psyr_0371 0.82 +2.7 396,272 + Psyr_0371 0.85 +0.3 396,272 + Psyr_0371 0.85 -0.1 396,272 + Psyr_0371 0.85 -2.9 396,272 + Psyr_0371 0.85 +0.7 396,272 + Psyr_0371 0.85 -1.7 396,273 - Psyr_0371 0.85 -1.3 396,273 - Psyr_0371 0.85 +1.7 396,273 - Psyr_0371 0.85 +1.4 396,273 - Psyr_0371 0.85 +0.7 396,273 - Psyr_0371 0.85 -0.4 396,273 - Psyr_0371 0.85 +0.1 396,273 - Psyr_0371 0.85 -0.1 396,482 - +1.5 396,566 + Psyr_0372 0.33 -0.7 396,567 - Psyr_0372 0.33 +0.7 396,588 + Psyr_0372 0.41 -0.8 396,589 - Psyr_0372 0.41 -1.0 396,589 - Psyr_0372 0.41 +2.1 397,123 + Psyr_0373 0.87 -0.5 397,123 + Psyr_0373 0.87 -1.5 397,124 - Psyr_0373 0.87 -1.8 397,140 + -2.9 397,140 + -1.3 397,222 + +0.4 397,222 + -0.5 397,222 + -0.8 397,222 + -0.2 397,222 + +0.7 397,222 + +0.7 397,222 + +1.2 397,222 + -0.7 397,222 + +0.4 397,222 + -0.7 397,222 + -0.6 397,222 + +0.3 397,222 + +2.1 397,222 + +0.7 397,222 + +0.1 397,222 + -1.3 397,223 - -0.3 397,223 - -0.6 397,223 - -0.9 397,223 - -0.1 397,223 - -1.3 397,223 - -1.1 397,223 - +2.8 397,223 - -0.2 397,223 - -0.9 397,223 - +0.7 397,223 - -0.7 397,223 - +0.8 397,223 - +1.0 397,223 - -1.2 397,223 - -1.1 397,224 + -0.9 397,224 + +1.0 397,224 + +0.7 397,224 + +1.6 397,224 + -1.5 397,225 - +0.1 397,225 - -0.1 397,225 - +0.2 397,225 - +0.1 397,225 - -0.8 397,225 - -1.1 397,225 - -0.5 397,225 - +0.1 397,225 - +0.2 397,225 - +1.6 397,225 - +1.7 397,225 - +1.4 397,225 - +1.1 397,225 - -0.2 397,225 - -0.2 397,226 + +0.2 397,226 + -1.8 397,226 + -1.7 397,226 + -0.0 397,226 + +0.9 397,226 + -0.5 397,227 - +1.3 397,227 - +0.8 397,227 - -0.5 397,227 - -0.0 397,227 - +0.3 397,227 - -1.1 397,249 + -0.4 397,257 + +0.1 397,258 - -1.1 397,258 - -2.0 397,335 - +2.0 397,488 + -1.7 397,489 - +2.3 397,590 + -1.6 397,591 - +2.2
Or see this region's nucleotide sequence