Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0359 and Psyr_0360 are separated by 197 nucleotides Psyr_0360 and Psyr_0361 are separated by 12 nucleotides Psyr_0361 and Psyr_0362 overlap by 4 nucleotides
Psyr_0359: Psyr_0359 - D-cysteine desulfhydrase, at 384,416 to 385,414
_0359
Psyr_0360: Psyr_0360 - serine O-acetyltransferase, at 385,612 to 386,565
_0360
Psyr_0361: Psyr_0361 - conserved hypothetical protein, at 386,578 to 387,285
_0361
Psyr_0362: Psyr_0362 - Sigma-70 region 2, at 387,282 to 387,848
_0362
Position (kb) 385
386
387 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 384.639 kb on + strand, within Psyr_0359 at 384.639 kb on + strand, within Psyr_0359 at 384.640 kb on - strand, within Psyr_0359 at 384.640 kb on - strand, within Psyr_0359 at 384.909 kb on + strand, within Psyr_0359 at 384.909 kb on + strand, within Psyr_0359 at 384.909 kb on + strand, within Psyr_0359 at 384.910 kb on - strand, within Psyr_0359 at 384.910 kb on - strand, within Psyr_0359 at 384.955 kb on - strand, within Psyr_0359 at 385.037 kb on + strand, within Psyr_0359 at 385.038 kb on - strand, within Psyr_0359 at 385.038 kb on - strand, within Psyr_0359 at 385.038 kb on - strand, within Psyr_0359 at 385.245 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.309 kb on - strand, within Psyr_0359 at 385.309 kb on - strand, within Psyr_0359 at 385.309 kb on - strand, within Psyr_0359 at 385.309 kb on - strand, within Psyr_0359 at 385.309 kb on - strand, within Psyr_0359 at 385.309 kb on - strand, within Psyr_0359 at 385.309 kb on - strand, within Psyr_0359 at 385.309 kb on - strand, within Psyr_0359 at 385.309 kb on - strand, within Psyr_0359 at 385.309 kb on - strand, within Psyr_0359 at 385.309 kb on - strand, within Psyr_0359 at 385.312 kb on + strand, within Psyr_0359 at 385.312 kb on + strand, within Psyr_0359 at 385.312 kb on + strand, within Psyr_0359 at 385.434 kb on - strand at 385.434 kb on - strand at 385.450 kb on - strand at 385.451 kb on + strand at 385.451 kb on + strand at 385.451 kb on + strand at 385.452 kb on - strand at 385.478 kb on + strand at 385.478 kb on + strand at 385.478 kb on + strand at 385.478 kb on + strand at 385.478 kb on + strand at 385.478 kb on + strand at 385.478 kb on + strand at 385.478 kb on + strand at 385.478 kb on + strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.504 kb on + strand at 385.559 kb on + strand at 385.559 kb on + strand at 385.559 kb on + strand at 385.559 kb on + strand at 385.559 kb on + strand at 385.559 kb on + strand at 385.559 kb on + strand at 385.560 kb on - strand at 385.619 kb on - strand at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.859 kb on - strand, within Psyr_0360 at 385.859 kb on - strand, within Psyr_0360 at 385.859 kb on - strand, within Psyr_0360 at 385.859 kb on - strand, within Psyr_0360 at 385.859 kb on - strand, within Psyr_0360 at 385.859 kb on - strand, within Psyr_0360 at 385.859 kb on - strand, within Psyr_0360 at 385.859 kb on - strand, within Psyr_0360 at 385.859 kb on - strand, within Psyr_0360 at 385.924 kb on + strand, within Psyr_0360 at 386.050 kb on + strand, within Psyr_0360 at 386.050 kb on + strand, within Psyr_0360 at 386.140 kb on + strand, within Psyr_0360 at 386.140 kb on + strand, within Psyr_0360 at 386.140 kb on + strand, within Psyr_0360 at 386.140 kb on + strand, within Psyr_0360 at 386.140 kb on + strand, within Psyr_0360 at 386.140 kb on + strand, within Psyr_0360 at 386.140 kb on + strand, within Psyr_0360 at 386.141 kb on - strand, within Psyr_0360 at 386.141 kb on - strand, within Psyr_0360 at 386.314 kb on + strand, within Psyr_0360 at 386.314 kb on + strand, within Psyr_0360 at 386.315 kb on - strand, within Psyr_0360 at 386.315 kb on - strand, within Psyr_0360 at 386.419 kb on + strand, within Psyr_0360 at 386.419 kb on + strand, within Psyr_0360 at 386.419 kb on + strand, within Psyr_0360 at 386.420 kb on - strand, within Psyr_0360 at 386.420 kb on - strand, within Psyr_0360 at 386.420 kb on - strand, within Psyr_0360 at 386.420 kb on - strand, within Psyr_0360 at 386.420 kb on - strand, within Psyr_0360 at 386.420 kb on - strand, within Psyr_0360 at 386.420 kb on - strand, within Psyr_0360 at 386.563 kb on + strand at 386.563 kb on + strand at 386.564 kb on - strand at 386.564 kb on - strand at 386.564 kb on - strand at 386.564 kb on - strand at 386.829 kb on + strand, within Psyr_0361 at 386.836 kb on + strand, within Psyr_0361 at 386.836 kb on + strand, within Psyr_0361 at 386.836 kb on + strand, within Psyr_0361 at 386.836 kb on + strand, within Psyr_0361 at 386.837 kb on - strand, within Psyr_0361 at 386.837 kb on - strand, within Psyr_0361 at 386.837 kb on - strand, within Psyr_0361 at 386.837 kb on - strand, within Psyr_0361 at 386.850 kb on + strand, within Psyr_0361 at 386.910 kb on - strand, within Psyr_0361 at 386.910 kb on - strand, within Psyr_0361 at 387.069 kb on + strand, within Psyr_0361 at 387.199 kb on + strand, within Psyr_0361 at 387.199 kb on + strand, within Psyr_0361 at 387.200 kb on - strand, within Psyr_0361 at 387.200 kb on - strand, within Psyr_0361 at 387.200 kb on - strand, within Psyr_0361 at 387.200 kb on - strand, within Psyr_0361 at 387.200 kb on - strand, within Psyr_0361 at 387.235 kb on + strand at 387.235 kb on + strand at 387.235 kb on + strand at 387.235 kb on + strand at 387.235 kb on + strand at 387.235 kb on + strand at 387.236 kb on - strand at 387.236 kb on - strand at 387.236 kb on - strand at 387.236 kb on - strand at 387.236 kb on - strand at 387.236 kb on - strand at 387.236 kb on - strand at 387.239 kb on + strand at 387.239 kb on + strand at 387.239 kb on + strand at 387.239 kb on + strand at 387.239 kb on + strand at 387.240 kb on - strand at 387.240 kb on - strand at 387.240 kb on - strand at 387.272 kb on - strand at 387.272 kb on - strand at 387.272 kb on - strand at 387.390 kb on + strand, within Psyr_0362 at 387.390 kb on + strand, within Psyr_0362 at 387.390 kb on + strand, within Psyr_0362 at 387.391 kb on - strand, within Psyr_0362 at 387.391 kb on - strand, within Psyr_0362 at 387.391 kb on - strand, within Psyr_0362 at 387.391 kb on - strand, within Psyr_0362 at 387.391 kb on - strand, within Psyr_0362 at 387.394 kb on + strand, within Psyr_0362 at 387.394 kb on + strand, within Psyr_0362 at 387.394 kb on + strand, within Psyr_0362 at 387.395 kb on - strand, within Psyr_0362 at 387.395 kb on - strand, within Psyr_0362 at 387.395 kb on - strand, within Psyr_0362 at 387.395 kb on - strand, within Psyr_0362 at 387.395 kb on - strand, within Psyr_0362 at 387.395 kb on - strand, within Psyr_0362 at 387.407 kb on + strand, within Psyr_0362 at 387.407 kb on + strand, within Psyr_0362 at 387.407 kb on + strand, within Psyr_0362 at 387.407 kb on + strand, within Psyr_0362 at 387.408 kb on - strand, within Psyr_0362
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 384,639 + Psyr_0359 0.22 -0.1 384,639 + Psyr_0359 0.22 -0.3 384,640 - Psyr_0359 0.22 -1.1 384,640 - Psyr_0359 0.22 +1.3 384,909 + Psyr_0359 0.49 +0.7 384,909 + Psyr_0359 0.49 +0.6 384,909 + Psyr_0359 0.49 -0.7 384,910 - Psyr_0359 0.49 +0.4 384,910 - Psyr_0359 0.49 -1.4 384,955 - Psyr_0359 0.54 -0.8 385,037 + Psyr_0359 0.62 +1.3 385,038 - Psyr_0359 0.62 -1.2 385,038 - Psyr_0359 0.62 -2.3 385,038 - Psyr_0359 0.62 +1.7 385,245 + Psyr_0359 0.83 +0.5 385,308 + Psyr_0359 0.89 +0.2 385,308 + Psyr_0359 0.89 +1.3 385,308 + Psyr_0359 0.89 +0.7 385,308 + Psyr_0359 0.89 +3.9 385,308 + Psyr_0359 0.89 -1.5 385,308 + Psyr_0359 0.89 +0.7 385,308 + Psyr_0359 0.89 +0.6 385,308 + Psyr_0359 0.89 -0.1 385,308 + Psyr_0359 0.89 +1.0 385,308 + Psyr_0359 0.89 -0.7 385,308 + Psyr_0359 0.89 -0.5 385,308 + Psyr_0359 0.89 +1.4 385,308 + Psyr_0359 0.89 +0.2 385,308 + Psyr_0359 0.89 +1.3 385,308 + Psyr_0359 0.89 +2.0 385,308 + Psyr_0359 0.89 -0.4 385,308 + Psyr_0359 0.89 -0.7 385,308 + Psyr_0359 0.89 -1.0 385,308 + Psyr_0359 0.89 +1.7 385,309 - Psyr_0359 0.89 +1.2 385,309 - Psyr_0359 0.89 -1.1 385,309 - Psyr_0359 0.89 -0.9 385,309 - Psyr_0359 0.89 +0.8 385,309 - Psyr_0359 0.89 +0.5 385,309 - Psyr_0359 0.89 +1.6 385,309 - Psyr_0359 0.89 -0.3 385,309 - Psyr_0359 0.89 +0.6 385,309 - Psyr_0359 0.89 -0.8 385,309 - Psyr_0359 0.89 -2.2 385,309 - Psyr_0359 0.89 +2.2 385,312 + Psyr_0359 0.90 +0.3 385,312 + Psyr_0359 0.90 +0.1 385,312 + Psyr_0359 0.90 -0.7 385,434 - -2.8 385,434 - -0.9 385,450 - +1.4 385,451 + +0.1 385,451 + +1.5 385,451 + +1.8 385,452 - -1.6 385,478 + -0.7 385,478 + +1.3 385,478 + +1.2 385,478 + -1.2 385,478 + +0.6 385,478 + +0.1 385,478 + -1.5 385,478 + +1.7 385,478 + +0.9 385,479 - -0.4 385,479 - -0.3 385,479 - -0.3 385,479 - -0.0 385,479 - +0.3 385,479 - -0.9 385,479 - +0.3 385,479 - +3.3 385,504 + +1.3 385,559 + -0.1 385,559 + -1.6 385,559 + +0.6 385,559 + -0.8 385,559 + +0.5 385,559 + +0.7 385,559 + +1.3 385,560 - +1.6 385,619 - +2.1 385,858 + Psyr_0360 0.26 +0.8 385,858 + Psyr_0360 0.26 +0.1 385,858 + Psyr_0360 0.26 +1.4 385,858 + Psyr_0360 0.26 +0.7 385,858 + Psyr_0360 0.26 +0.1 385,858 + Psyr_0360 0.26 -1.6 385,858 + Psyr_0360 0.26 +1.4 385,858 + Psyr_0360 0.26 +1.3 385,858 + Psyr_0360 0.26 +1.3 385,858 + Psyr_0360 0.26 +0.7 385,858 + Psyr_0360 0.26 +1.3 385,858 + Psyr_0360 0.26 +3.0 385,858 + Psyr_0360 0.26 -0.8 385,858 + Psyr_0360 0.26 +0.4 385,859 - Psyr_0360 0.26 +1.8 385,859 - Psyr_0360 0.26 +0.7 385,859 - Psyr_0360 0.26 -0.6 385,859 - Psyr_0360 0.26 -2.8 385,859 - Psyr_0360 0.26 +0.7 385,859 - Psyr_0360 0.26 +0.5 385,859 - Psyr_0360 0.26 -1.0 385,859 - Psyr_0360 0.26 -0.2 385,859 - Psyr_0360 0.26 +0.6 385,924 + Psyr_0360 0.33 +0.7 386,050 + Psyr_0360 0.46 -0.6 386,050 + Psyr_0360 0.46 +0.3 386,140 + Psyr_0360 0.55 -0.0 386,140 + Psyr_0360 0.55 +0.5 386,140 + Psyr_0360 0.55 -1.3 386,140 + Psyr_0360 0.55 +0.7 386,140 + Psyr_0360 0.55 -0.2 386,140 + Psyr_0360 0.55 -1.1 386,140 + Psyr_0360 0.55 +1.7 386,141 - Psyr_0360 0.55 -2.6 386,141 - Psyr_0360 0.55 -0.3 386,314 + Psyr_0360 0.74 -0.0 386,314 + Psyr_0360 0.74 +1.3 386,315 - Psyr_0360 0.74 +0.7 386,315 - Psyr_0360 0.74 -1.3 386,419 + Psyr_0360 0.85 +0.9 386,419 + Psyr_0360 0.85 -0.8 386,419 + Psyr_0360 0.85 -0.1 386,420 - Psyr_0360 0.85 -0.6 386,420 - Psyr_0360 0.85 -1.2 386,420 - Psyr_0360 0.85 +0.3 386,420 - Psyr_0360 0.85 +0.9 386,420 - Psyr_0360 0.85 -2.6 386,420 - Psyr_0360 0.85 -0.3 386,420 - Psyr_0360 0.85 -0.6 386,563 + +0.7 386,563 + +1.0 386,564 - +2.7 386,564 - -0.2 386,564 - -0.0 386,564 - +0.5 386,829 + Psyr_0361 0.35 +1.4 386,836 + Psyr_0361 0.36 +0.7 386,836 + Psyr_0361 0.36 +0.5 386,836 + Psyr_0361 0.36 +1.1 386,836 + Psyr_0361 0.36 -1.1 386,837 - Psyr_0361 0.37 -0.1 386,837 - Psyr_0361 0.37 +0.9 386,837 - Psyr_0361 0.37 +0.7 386,837 - Psyr_0361 0.37 +1.2 386,850 + Psyr_0361 0.38 -1.0 386,910 - Psyr_0361 0.47 -1.2 386,910 - Psyr_0361 0.47 +1.1 387,069 + Psyr_0361 0.69 +2.1 387,199 + Psyr_0361 0.88 -0.5 387,199 + Psyr_0361 0.88 +2.3 387,200 - Psyr_0361 0.88 -1.0 387,200 - Psyr_0361 0.88 +0.3 387,200 - Psyr_0361 0.88 +2.2 387,200 - Psyr_0361 0.88 -2.0 387,200 - Psyr_0361 0.88 +1.0 387,235 + -2.3 387,235 + -1.2 387,235 + -0.4 387,235 + +0.9 387,235 + -0.9 387,235 + +0.3 387,236 - +0.1 387,236 - +0.6 387,236 - -1.9 387,236 - -2.5 387,236 - -0.0 387,236 - +1.5 387,236 - -1.0 387,239 + -0.1 387,239 + -1.0 387,239 + -0.3 387,239 + +1.9 387,239 + -0.5 387,240 - +0.1 387,240 - -0.5 387,240 - +1.0 387,272 - -0.2 387,272 - +1.7 387,272 - +1.2 387,390 + Psyr_0362 0.19 -2.0 387,390 + Psyr_0362 0.19 +1.8 387,390 + Psyr_0362 0.19 +0.4 387,391 - Psyr_0362 0.19 +0.5 387,391 - Psyr_0362 0.19 +0.9 387,391 - Psyr_0362 0.19 -0.9 387,391 - Psyr_0362 0.19 -1.0 387,391 - Psyr_0362 0.19 -2.1 387,394 + Psyr_0362 0.20 -1.1 387,394 + Psyr_0362 0.20 -1.2 387,394 + Psyr_0362 0.20 -0.3 387,395 - Psyr_0362 0.20 +0.4 387,395 - Psyr_0362 0.20 -0.8 387,395 - Psyr_0362 0.20 +1.8 387,395 - Psyr_0362 0.20 -0.0 387,395 - Psyr_0362 0.20 +0.8 387,395 - Psyr_0362 0.20 +0.1 387,407 + Psyr_0362 0.22 +0.4 387,407 + Psyr_0362 0.22 +0.4 387,407 + Psyr_0362 0.22 -0.8 387,407 + Psyr_0362 0.22 +0.5 387,408 - Psyr_0362 0.22 -0.5
Or see this region's nucleotide sequence