Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09255

Experiment: formate McAA folic dropout

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01120 and MMJJ_RS01125 are separated by 9 nucleotidesMMJJ_RS01125 and MMJJ_RS09255 are separated by 170 nucleotidesMMJJ_RS09255 and MMJJ_RS01135 are separated by 64 nucleotides MMJJ_RS01120: MMJJ_RS01120 - hypothetical protein, at 217,540 to 217,821 _RS01120 MMJJ_RS01125: MMJJ_RS01125 - hypothetical protein, at 217,831 to 218,205 _RS01125 MMJJ_RS09255: MMJJ_RS09255 - hypothetical protein, at 218,376 to 218,561 _RS09255 MMJJ_RS01135: MMJJ_RS01135 - hypothetical protein, at 218,626 to 222,324 _RS01135 Position (kb) 218 219Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 217.469 kb on + strandat 217.469 kb on + strandat 217.469 kb on + strandat 217.472 kb on + strandat 217.472 kb on + strandat 217.474 kb on - strandat 217.480 kb on - strandat 217.480 kb on - strandat 217.480 kb on - strandat 217.481 kb on + strandat 217.481 kb on + strandat 217.482 kb on - strandat 217.483 kb on + strandat 217.483 kb on + strandat 217.483 kb on + strandat 217.483 kb on + strandat 217.483 kb on + strandat 217.483 kb on + strandat 217.483 kb on + strandat 217.483 kb on + strandat 217.484 kb on - strandat 217.484 kb on - strandat 217.484 kb on - strandat 217.484 kb on - strandat 217.484 kb on - strandat 217.485 kb on + strandat 217.485 kb on + strandat 217.485 kb on + strandat 217.485 kb on + strandat 217.485 kb on + strandat 217.486 kb on - strandat 217.486 kb on - strandat 217.486 kb on - strandat 217.486 kb on - strandat 217.486 kb on - strandat 217.487 kb on + strandat 217.487 kb on + strandat 217.487 kb on + strandat 217.487 kb on + strandat 217.578 kb on - strand, within MMJJ_RS01120at 217.579 kb on + strand, within MMJJ_RS01120at 217.580 kb on - strand, within MMJJ_RS01120at 217.581 kb on + strand, within MMJJ_RS01120at 217.599 kb on - strand, within MMJJ_RS01120at 217.600 kb on + strand, within MMJJ_RS01120at 217.607 kb on - strand, within MMJJ_RS01120at 217.616 kb on - strand, within MMJJ_RS01120at 217.616 kb on - strand, within MMJJ_RS01120at 217.616 kb on - strand, within MMJJ_RS01120at 217.616 kb on - strand, within MMJJ_RS01120at 217.616 kb on - strand, within MMJJ_RS01120at 217.617 kb on + strand, within MMJJ_RS01120at 217.617 kb on + strand, within MMJJ_RS01120at 217.617 kb on + strand, within MMJJ_RS01120at 217.624 kb on - strand, within MMJJ_RS01120at 217.624 kb on - strand, within MMJJ_RS01120at 217.624 kb on - strand, within MMJJ_RS01120at 217.625 kb on + strandat 217.625 kb on + strand, within MMJJ_RS01120at 217.626 kb on - strand, within MMJJ_RS01120at 217.626 kb on - strand, within MMJJ_RS01120at 217.626 kb on - strand, within MMJJ_RS01120at 217.626 kb on - strand, within MMJJ_RS01120at 217.626 kb on - strand, within MMJJ_RS01120at 217.627 kb on + strand, within MMJJ_RS01120at 217.627 kb on + strand, within MMJJ_RS01120at 217.628 kb on - strand, within MMJJ_RS01120at 217.628 kb on - strand, within MMJJ_RS01120at 217.667 kb on + strand, within MMJJ_RS01120at 217.686 kb on - strand, within MMJJ_RS01120at 217.686 kb on - strand, within MMJJ_RS01120at 217.687 kb on + strand, within MMJJ_RS01120at 217.687 kb on + strand, within MMJJ_RS01120at 217.687 kb on + strand, within MMJJ_RS01120at 217.687 kb on + strand, within MMJJ_RS01120at 217.693 kb on - strand, within MMJJ_RS01120at 217.694 kb on + strand, within MMJJ_RS01120at 217.712 kb on + strand, within MMJJ_RS01120at 217.712 kb on + strand, within MMJJ_RS01120at 217.722 kb on + strand, within MMJJ_RS01120at 217.733 kb on + strand, within MMJJ_RS01120at 217.733 kb on + strand, within MMJJ_RS01120at 217.774 kb on - strand, within MMJJ_RS01120at 217.775 kb on + strand, within MMJJ_RS01120at 217.780 kb on + strand, within MMJJ_RS01120at 217.819 kb on - strandat 217.820 kb on + strandat 217.851 kb on - strandat 217.851 kb on - strandat 217.851 kb on - strandat 217.852 kb on + strandat 217.855 kb on + strandat 218.067 kb on + strand, within MMJJ_RS01125at 218.089 kb on - strand, within MMJJ_RS01125at 218.091 kb on - strand, within MMJJ_RS01125at 218.094 kb on - strand, within MMJJ_RS01125at 218.095 kb on + strand, within MMJJ_RS01125at 218.095 kb on + strand, within MMJJ_RS01125at 218.095 kb on + strand, within MMJJ_RS01125at 218.096 kb on - strand, within MMJJ_RS01125at 218.144 kb on - strand, within MMJJ_RS01125at 218.216 kb on + strandat 218.216 kb on + strandat 218.241 kb on - strandat 218.242 kb on + strandat 218.242 kb on + strandat 218.244 kb on - strandat 218.250 kb on - strandat 218.258 kb on - strandat 218.314 kb on - strandat 218.315 kb on + strandat 218.377 kb on - strandat 218.379 kb on - strandat 218.380 kb on + strandat 218.412 kb on + strand, within MMJJ_RS09255at 218.414 kb on - strand, within MMJJ_RS09255at 218.414 kb on - strand, within MMJJ_RS09255at 218.442 kb on - strand, within MMJJ_RS09255at 218.502 kb on + strand, within MMJJ_RS09255at 218.634 kb on - strandat 218.653 kb on - strandat 218.654 kb on + strandat 218.659 kb on + strandat 218.675 kb on + strandat 218.677 kb on + strandat 218.677 kb on + strandat 218.682 kb on - strandat 218.731 kb on + strandat 218.914 kb on + strandat 218.917 kb on - strandat 219.034 kb on - strand, within MMJJ_RS01135at 219.109 kb on + strand, within MMJJ_RS01135at 219.121 kb on + strand, within MMJJ_RS01135at 219.218 kb on - strand, within MMJJ_RS01135at 219.219 kb on + strand, within MMJJ_RS01135at 219.246 kb on - strand, within MMJJ_RS01135at 219.246 kb on - strand, within MMJJ_RS01135at 219.262 kb on - strand, within MMJJ_RS01135at 219.264 kb on - strand, within MMJJ_RS01135at 219.264 kb on - strand, within MMJJ_RS01135at 219.283 kb on + strand, within MMJJ_RS01135at 219.340 kb on - strand, within MMJJ_RS01135at 219.346 kb on - strand, within MMJJ_RS01135at 219.346 kb on - strand, within MMJJ_RS01135at 219.346 kb on - strand, within MMJJ_RS01135at 219.346 kb on - strand, within MMJJ_RS01135at 219.346 kb on - strand, within MMJJ_RS01135at 219.347 kb on + strand, within MMJJ_RS01135at 219.347 kb on + strand, within MMJJ_RS01135at 219.347 kb on + strand, within MMJJ_RS01135at 219.379 kb on - strandat 219.380 kb on + strand, within MMJJ_RS01135at 219.381 kb on - strand, within MMJJ_RS01135at 219.381 kb on - strand, within MMJJ_RS01135at 219.385 kb on + strand, within MMJJ_RS01135at 219.508 kb on - strand, within MMJJ_RS01135

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Per-strain Table

Position Strand Gene LocusTag Fraction formate McAA folic dropout
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217,469 + +0.1
217,469 + +0.1
217,469 + -0.2
217,472 + +0.6
217,472 + -2.5
217,474 - -0.8
217,480 - -0.4
217,480 - +0.0
217,480 - +0.1
217,481 + -0.0
217,481 + +0.6
217,482 - -0.9
217,483 + -0.4
217,483 + -0.6
217,483 + -0.2
217,483 + -0.0
217,483 + -0.0
217,483 + +0.5
217,483 + -0.1
217,483 + +0.5
217,484 - -0.3
217,484 - +0.7
217,484 - -1.0
217,484 - -0.8
217,484 - -0.5
217,485 + +0.8
217,485 + +0.0
217,485 + +0.3
217,485 + +0.2
217,485 + -0.6
217,486 - +2.4
217,486 - +0.3
217,486 - +0.7
217,486 - -0.1
217,486 - -0.8
217,487 + +0.2
217,487 + +0.2
217,487 + +0.1
217,487 + +0.9
217,578 - MMJJ_RS01120 0.13 +0.7
217,579 + MMJJ_RS01120 0.14 +0.2
217,580 - MMJJ_RS01120 0.14 -0.2
217,581 + MMJJ_RS01120 0.15 -0.2
217,599 - MMJJ_RS01120 0.21 -0.1
217,600 + MMJJ_RS01120 0.21 +0.1
217,607 - MMJJ_RS01120 0.24 +0.5
217,616 - MMJJ_RS01120 0.27 +0.3
217,616 - MMJJ_RS01120 0.27 -0.5
217,616 - MMJJ_RS01120 0.27 -0.5
217,616 - MMJJ_RS01120 0.27 +0.2
217,616 - MMJJ_RS01120 0.27 -1.4
217,617 + MMJJ_RS01120 0.27 +0.2
217,617 + MMJJ_RS01120 0.27 +0.3
217,617 + MMJJ_RS01120 0.27 +1.9
217,624 - MMJJ_RS01120 0.30 +0.1
217,624 - MMJJ_RS01120 0.30 +0.4
217,624 - MMJJ_RS01120 0.30 +0.9
217,625 + -1.2
217,625 + MMJJ_RS01120 0.30 -0.0
217,626 - MMJJ_RS01120 0.30 -0.6
217,626 - MMJJ_RS01120 0.30 +1.5
217,626 - MMJJ_RS01120 0.30 -0.3
217,626 - MMJJ_RS01120 0.30 +1.3
217,626 - MMJJ_RS01120 0.30 +0.1
217,627 + MMJJ_RS01120 0.31 +0.2
217,627 + MMJJ_RS01120 0.31 +0.3
217,628 - MMJJ_RS01120 0.31 -0.1
217,628 - MMJJ_RS01120 0.31 -0.1
217,667 + MMJJ_RS01120 0.45 -1.2
217,686 - MMJJ_RS01120 0.52 -1.0
217,686 - MMJJ_RS01120 0.52 -3.0
217,687 + MMJJ_RS01120 0.52 -0.4
217,687 + MMJJ_RS01120 0.52 -0.2
217,687 + MMJJ_RS01120 0.52 +0.3
217,687 + MMJJ_RS01120 0.52 +0.1
217,693 - MMJJ_RS01120 0.54 -0.5
217,694 + MMJJ_RS01120 0.55 +1.0
217,712 + MMJJ_RS01120 0.61 +0.8
217,712 + MMJJ_RS01120 0.61 -0.7
217,722 + MMJJ_RS01120 0.65 +0.2
217,733 + MMJJ_RS01120 0.68 +0.6
217,733 + MMJJ_RS01120 0.68 +0.2
217,774 - MMJJ_RS01120 0.83 -1.1
217,775 + MMJJ_RS01120 0.83 -0.6
217,780 + MMJJ_RS01120 0.85 +0.8
217,819 - -0.0
217,820 + +0.3
217,851 - -0.0
217,851 - +0.6
217,851 - -0.8
217,852 + -0.1
217,855 + +0.4
218,067 + MMJJ_RS01125 0.63 +0.9
218,089 - MMJJ_RS01125 0.69 -0.1
218,091 - MMJJ_RS01125 0.69 +0.4
218,094 - MMJJ_RS01125 0.70 -0.6
218,095 + MMJJ_RS01125 0.70 -0.3
218,095 + MMJJ_RS01125 0.70 -0.3
218,095 + MMJJ_RS01125 0.70 +0.1
218,096 - MMJJ_RS01125 0.71 +0.8
218,144 - MMJJ_RS01125 0.83 -0.3
218,216 + +0.2
218,216 + +0.2
218,241 - +0.0
218,242 + -0.4
218,242 + +0.3
218,244 - -0.1
218,250 - +0.5
218,258 - -0.3
218,314 - -0.3
218,315 + +0.6
218,377 - +0.8
218,379 - +0.0
218,380 + +0.6
218,412 + MMJJ_RS09255 0.19 -0.1
218,414 - MMJJ_RS09255 0.20 +0.7
218,414 - MMJJ_RS09255 0.20 -0.0
218,442 - MMJJ_RS09255 0.35 +0.6
218,502 + MMJJ_RS09255 0.68 +0.4
218,634 - +0.5
218,653 - +0.4
218,654 + +0.1
218,659 + +0.1
218,675 + -0.5
218,677 + +0.4
218,677 + +0.4
218,682 - -0.3
218,731 + +0.4
218,914 + +1.6
218,917 - -1.6
219,034 - MMJJ_RS01135 0.11 +1.4
219,109 + MMJJ_RS01135 0.13 -0.3
219,121 + MMJJ_RS01135 0.13 -0.2
219,218 - MMJJ_RS01135 0.16 -0.7
219,219 + MMJJ_RS01135 0.16 -0.0
219,246 - MMJJ_RS01135 0.17 +0.9
219,246 - MMJJ_RS01135 0.17 +0.1
219,262 - MMJJ_RS01135 0.17 -0.4
219,264 - MMJJ_RS01135 0.17 -0.6
219,264 - MMJJ_RS01135 0.17 +0.3
219,283 + MMJJ_RS01135 0.18 -0.0
219,340 - MMJJ_RS01135 0.19 -1.2
219,346 - MMJJ_RS01135 0.19 +1.1
219,346 - MMJJ_RS01135 0.19 -0.6
219,346 - MMJJ_RS01135 0.19 +1.2
219,346 - MMJJ_RS01135 0.19 -0.2
219,346 - MMJJ_RS01135 0.19 -0.1
219,347 + MMJJ_RS01135 0.19 +0.2
219,347 + MMJJ_RS01135 0.19 -1.9
219,347 + MMJJ_RS01135 0.19 -0.8
219,379 - -0.2
219,380 + MMJJ_RS01135 0.20 -0.7
219,381 - MMJJ_RS01135 0.20 -0.6
219,381 - MMJJ_RS01135 0.20 -0.1
219,385 + MMJJ_RS01135 0.21 +0.4
219,508 - MMJJ_RS01135 0.24 +1.3

Or see this region's nucleotide sequence