Experiment: formate McAA folic dropout
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS05345 and MMJJ_RS05350 overlap by 4 nucleotides MMJJ_RS05350 and MMJJ_RS05355 are separated by 4 nucleotides MMJJ_RS05355 and MMJJ_RS05360 are separated by 116 nucleotides
MMJJ_RS05345: MMJJ_RS05345 - ATP-dependent Clp protease proteolytic subunit, at 994,076 to 994,900
_RS05345
MMJJ_RS05350: MMJJ_RS05350 - DUF192 domain-containing protein, at 994,897 to 995,232
_RS05350
MMJJ_RS05355: MMJJ_RS05355 - DUF2121 domain-containing protein, at 995,237 to 996,112
_RS05355
MMJJ_RS05360: MMJJ_RS05360 - nickel-responsive transcriptional regulator NikR, at 996,229 to 996,654
_RS05360
Position (kb) 994
995
996 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 993.913 kb on - strand at 993.913 kb on - strand at 993.914 kb on + strand at 993.914 kb on + strand at 993.914 kb on + strand at 993.916 kb on + strand at 993.922 kb on + strand at 993.936 kb on + strand at 993.954 kb on - strand at 993.958 kb on + strand at 993.962 kb on + strand at 993.962 kb on + strand at 993.971 kb on - strand at 993.971 kb on - strand at 993.971 kb on - strand at 993.971 kb on - strand at 993.971 kb on - strand at 993.971 kb on - strand at 993.971 kb on - strand at 993.972 kb on + strand at 993.972 kb on + strand at 993.972 kb on + strand at 993.975 kb on - strand at 993.975 kb on - strand at 993.975 kb on - strand at 993.975 kb on - strand at 993.975 kb on - strand at 993.975 kb on - strand at 993.976 kb on + strand at 993.976 kb on + strand at 993.976 kb on + strand at 993.980 kb on - strand at 993.985 kb on - strand at 993.989 kb on + strand at 993.999 kb on - strand at 993.999 kb on - strand at 994.000 kb on + strand at 994.000 kb on + strand at 994.000 kb on + strand at 994.001 kb on - strand at 994.001 kb on - strand at 994.001 kb on - strand at 994.001 kb on - strand at 994.001 kb on - strand at 994.001 kb on - strand at 994.002 kb on + strand at 994.002 kb on + strand at 994.002 kb on + strand at 994.002 kb on + strand at 994.002 kb on + strand at 994.003 kb on - strand at 994.003 kb on - strand at 994.003 kb on - strand at 994.003 kb on - strand at 994.003 kb on - strand at 994.003 kb on - strand at 994.004 kb on + strand at 994.004 kb on + strand at 994.004 kb on + strand at 994.004 kb on + strand at 994.004 kb on + strand at 994.004 kb on + strand at 994.004 kb on + strand at 994.004 kb on + strand at 994.004 kb on + strand at 994.004 kb on + strand at 994.004 kb on + strand at 994.005 kb on - strand at 994.005 kb on - strand at 994.005 kb on - strand at 994.005 kb on - strand at 994.005 kb on - strand at 994.005 kb on - strand at 994.005 kb on - strand at 994.005 kb on - strand at 994.005 kb on - strand at 994.005 kb on - strand at 994.006 kb on + strand at 994.006 kb on + strand at 994.006 kb on + strand at 994.006 kb on + strand at 994.006 kb on + strand at 994.006 kb on + strand at 994.006 kb on + strand at 994.006 kb on + strand at 994.006 kb on + strand at 994.006 kb on + strand at 994.006 kb on + strand at 994.011 kb on + strand at 994.011 kb on + strand at 994.015 kb on - strand at 994.015 kb on - strand at 994.015 kb on - strand at 994.015 kb on - strand at 994.016 kb on + strand at 994.020 kb on + strand at 994.020 kb on + strand at 994.028 kb on - strand at 994.029 kb on + strand at 994.029 kb on + strand at 994.141 kb on - strand at 994.142 kb on + strand at 994.145 kb on - strand at 994.146 kb on + strand at 994.147 kb on - strand at 994.147 kb on - strand at 994.147 kb on - strand at 994.147 kb on - strand at 994.147 kb on - strand at 994.148 kb on + strand at 994.148 kb on + strand at 994.148 kb on + strand at 994.148 kb on + strand at 994.148 kb on + strand at 994.156 kb on + strand at 994.174 kb on + strand, within MMJJ_RS05345 at 994.259 kb on - strand, within MMJJ_RS05345 at 994.261 kb on - strand, within MMJJ_RS05345 at 994.262 kb on + strand, within MMJJ_RS05345 at 994.262 kb on + strand, within MMJJ_RS05345 at 994.265 kb on - strand, within MMJJ_RS05345 at 994.265 kb on - strand, within MMJJ_RS05345 at 994.265 kb on - strand, within MMJJ_RS05345 at 994.265 kb on - strand, within MMJJ_RS05345 at 994.266 kb on + strand, within MMJJ_RS05345 at 994.266 kb on + strand, within MMJJ_RS05345 at 994.266 kb on + strand, within MMJJ_RS05345 at 994.266 kb on + strand, within MMJJ_RS05345 at 994.266 kb on + strand, within MMJJ_RS05345 at 994.266 kb on + strand, within MMJJ_RS05345 at 994.266 kb on + strand, within MMJJ_RS05345 at 994.266 kb on + strand, within MMJJ_RS05345 at 994.266 kb on - strand, within MMJJ_RS05345 at 994.267 kb on - strand, within MMJJ_RS05345 at 994.268 kb on + strand, within MMJJ_RS05345 at 994.270 kb on - strand, within MMJJ_RS05345 at 994.275 kb on - strand, within MMJJ_RS05345 at 994.306 kb on - strand, within MMJJ_RS05345 at 994.306 kb on - strand, within MMJJ_RS05345 at 994.339 kb on + strand, within MMJJ_RS05345 at 994.339 kb on + strand, within MMJJ_RS05345 at 994.339 kb on + strand, within MMJJ_RS05345 at 994.342 kb on + strand, within MMJJ_RS05345 at 994.366 kb on + strand, within MMJJ_RS05345 at 994.366 kb on + strand, within MMJJ_RS05345 at 994.424 kb on + strand, within MMJJ_RS05345 at 994.424 kb on + strand, within MMJJ_RS05345 at 994.461 kb on - strand, within MMJJ_RS05345 at 994.486 kb on + strand, within MMJJ_RS05345 at 994.632 kb on - strand, within MMJJ_RS05345 at 994.655 kb on - strand, within MMJJ_RS05345 at 994.656 kb on + strand, within MMJJ_RS05345 at 994.660 kb on - strand, within MMJJ_RS05345 at 994.660 kb on - strand, within MMJJ_RS05345 at 994.661 kb on + strand, within MMJJ_RS05345 at 994.786 kb on - strand, within MMJJ_RS05345 at 994.862 kb on - strand at 994.863 kb on + strand at 994.892 kb on + strand at 994.933 kb on - strand, within MMJJ_RS05350 at 994.940 kb on - strand, within MMJJ_RS05350 at 994.944 kb on - strand, within MMJJ_RS05350 at 994.944 kb on - strand, within MMJJ_RS05350 at 994.954 kb on + strand, within MMJJ_RS05350 at 995.031 kb on - strand, within MMJJ_RS05350 at 995.070 kb on - strand, within MMJJ_RS05350 at 995.073 kb on + strand, within MMJJ_RS05350 at 995.073 kb on + strand, within MMJJ_RS05350 at 995.098 kb on + strand, within MMJJ_RS05350 at 995.141 kb on + strand, within MMJJ_RS05350 at 995.163 kb on - strand, within MMJJ_RS05350 at 995.192 kb on - strand, within MMJJ_RS05350 at 995.204 kb on - strand at 995.231 kb on + strand at 995.315 kb on - strand at 995.316 kb on + strand at 995.317 kb on - strand at 995.382 kb on + strand, within MMJJ_RS05355 at 995.382 kb on + strand, within MMJJ_RS05355 at 995.387 kb on + strand, within MMJJ_RS05355 at 995.409 kb on - strand, within MMJJ_RS05355 at 995.410 kb on + strand, within MMJJ_RS05355 at 995.411 kb on - strand, within MMJJ_RS05355 at 995.411 kb on - strand, within MMJJ_RS05355 at 995.411 kb on - strand, within MMJJ_RS05355 at 995.412 kb on + strand, within MMJJ_RS05355 at 995.483 kb on - strand, within MMJJ_RS05355 at 995.523 kb on - strand, within MMJJ_RS05355 at 995.527 kb on - strand, within MMJJ_RS05355 at 995.531 kb on - strand, within MMJJ_RS05355 at 995.592 kb on - strand, within MMJJ_RS05355 at 995.612 kb on - strand, within MMJJ_RS05355 at 995.613 kb on + strand, within MMJJ_RS05355 at 995.613 kb on + strand, within MMJJ_RS05355 at 995.706 kb on + strand, within MMJJ_RS05355 at 995.729 kb on - strand, within MMJJ_RS05355 at 995.729 kb on - strand, within MMJJ_RS05355 at 995.729 kb on - strand, within MMJJ_RS05355 at 995.730 kb on + strand, within MMJJ_RS05355 at 995.731 kb on - strand, within MMJJ_RS05355 at 995.874 kb on + strand, within MMJJ_RS05355 at 995.886 kb on + strand, within MMJJ_RS05355 at 995.921 kb on + strand, within MMJJ_RS05355 at 995.930 kb on + strand, within MMJJ_RS05355 at 995.930 kb on + strand, within MMJJ_RS05355 at 996.059 kb on + strand at 996.070 kb on - strand at 996.071 kb on + strand at 996.124 kb on - strand at 996.138 kb on + strand at 996.146 kb on + strand at 996.187 kb on - strand at 996.190 kb on - strand at 996.196 kb on - strand at 996.196 kb on - strand at 996.196 kb on - strand at 996.196 kb on - strand at 996.207 kb on - strand at 996.208 kb on + strand at 996.226 kb on + strand at 996.226 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction formate McAA folic dropout remove 993,913 - +0.7 993,913 - +1.0 993,914 + -0.3 993,914 + +0.1 993,914 + +0.6 993,916 + +1.1 993,922 + +0.9 993,936 + +0.1 993,954 - -0.1 993,958 + -1.0 993,962 + -0.1 993,962 + -1.8 993,971 - -0.3 993,971 - -1.6 993,971 - -0.4 993,971 - -0.4 993,971 - +0.8 993,971 - +0.1 993,971 - +0.8 993,972 + -1.1 993,972 + -2.3 993,972 + +1.2 993,975 - +0.1 993,975 - -0.1 993,975 - -0.5 993,975 - -0.0 993,975 - -1.6 993,975 - +0.4 993,976 + +0.1 993,976 + -0.5 993,976 + +0.5 993,980 - -0.4 993,985 - -0.5 993,989 + +0.3 993,999 - +0.0 993,999 - -0.2 994,000 + -0.2 994,000 + -0.3 994,000 + +0.4 994,001 - -1.3 994,001 - -0.3 994,001 - -3.7 994,001 - +0.1 994,001 - +1.0 994,001 - -0.9 994,002 + +0.1 994,002 + +0.8 994,002 + -0.3 994,002 + -1.4 994,002 + -0.1 994,003 - +0.4 994,003 - -0.9 994,003 - -0.7 994,003 - -0.0 994,003 - -1.6 994,003 - -1.2 994,004 + -0.9 994,004 + -0.4 994,004 + -0.3 994,004 + +0.3 994,004 + -0.7 994,004 + +0.4 994,004 + -0.2 994,004 + -0.3 994,004 + -1.7 994,004 + +0.1 994,004 + -0.1 994,005 - -0.1 994,005 - -0.5 994,005 - +0.1 994,005 - +0.2 994,005 - +0.2 994,005 - -0.0 994,005 - -1.5 994,005 - +1.0 994,005 - -0.7 994,005 - -0.5 994,006 + +0.4 994,006 + +0.7 994,006 + -0.5 994,006 + +0.2 994,006 + -1.0 994,006 + +0.4 994,006 + +0.9 994,006 + -0.3 994,006 + -1.0 994,006 + -0.7 994,006 + -0.7 994,011 + -0.1 994,011 + +0.7 994,015 - -2.6 994,015 - +0.5 994,015 - -0.4 994,015 - +0.1 994,016 + -0.5 994,020 + -0.1 994,020 + -2.0 994,028 - -0.3 994,029 + +0.2 994,029 + +0.2 994,141 - +0.3 994,142 + +0.3 994,145 - -2.1 994,146 + -0.3 994,147 - +0.4 994,147 - +1.0 994,147 - +0.6 994,147 - +0.4 994,147 - +0.5 994,148 + +0.5 994,148 + +1.4 994,148 + +0.4 994,148 + -0.0 994,148 + +1.4 994,156 + +0.0 994,174 + MMJJ_RS05345 0.12 +0.4 994,259 - MMJJ_RS05345 0.22 +0.5 994,261 - MMJJ_RS05345 0.22 -0.6 994,262 + MMJJ_RS05345 0.23 -0.1 994,262 + MMJJ_RS05345 0.23 -0.9 994,265 - MMJJ_RS05345 0.23 +0.1 994,265 - MMJJ_RS05345 0.23 -0.2 994,265 - MMJJ_RS05345 0.23 +0.0 994,265 - MMJJ_RS05345 0.23 +0.4 994,266 + MMJJ_RS05345 0.23 -1.7 994,266 + MMJJ_RS05345 0.23 -2.1 994,266 + MMJJ_RS05345 0.23 +1.0 994,266 + MMJJ_RS05345 0.23 -1.4 994,266 + MMJJ_RS05345 0.23 -0.3 994,266 + MMJJ_RS05345 0.23 +1.3 994,266 + MMJJ_RS05345 0.23 -0.1 994,266 + MMJJ_RS05345 0.23 +0.2 994,266 - MMJJ_RS05345 0.23 +1.5 994,267 - MMJJ_RS05345 0.23 +0.5 994,268 + MMJJ_RS05345 0.23 -0.4 994,270 - MMJJ_RS05345 0.24 +0.2 994,275 - MMJJ_RS05345 0.24 -1.5 994,306 - MMJJ_RS05345 0.28 -0.5 994,306 - MMJJ_RS05345 0.28 -0.1 994,339 + MMJJ_RS05345 0.32 +0.1 994,339 + MMJJ_RS05345 0.32 -0.7 994,339 + MMJJ_RS05345 0.32 -1.0 994,342 + MMJJ_RS05345 0.32 +0.1 994,366 + MMJJ_RS05345 0.35 +0.3 994,366 + MMJJ_RS05345 0.35 +1.2 994,424 + MMJJ_RS05345 0.42 -1.5 994,424 + MMJJ_RS05345 0.42 +0.0 994,461 - MMJJ_RS05345 0.47 +0.8 994,486 + MMJJ_RS05345 0.50 -0.9 994,632 - MMJJ_RS05345 0.67 +0.4 994,655 - MMJJ_RS05345 0.70 -0.3 994,656 + MMJJ_RS05345 0.70 -0.8 994,660 - MMJJ_RS05345 0.71 +0.2 994,660 - MMJJ_RS05345 0.71 -0.6 994,661 + MMJJ_RS05345 0.71 +0.7 994,786 - MMJJ_RS05345 0.86 -0.4 994,862 - -0.2 994,863 + +0.6 994,892 + +1.4 994,933 - MMJJ_RS05350 0.11 -0.6 994,940 - MMJJ_RS05350 0.13 +1.4 994,944 - MMJJ_RS05350 0.14 +0.1 994,944 - MMJJ_RS05350 0.14 -0.6 994,954 + MMJJ_RS05350 0.17 +1.0 995,031 - MMJJ_RS05350 0.40 +0.9 995,070 - MMJJ_RS05350 0.51 +0.4 995,073 + MMJJ_RS05350 0.52 +0.2 995,073 + MMJJ_RS05350 0.52 -0.1 995,098 + MMJJ_RS05350 0.60 +1.0 995,141 + MMJJ_RS05350 0.73 +0.1 995,163 - MMJJ_RS05350 0.79 +1.4 995,192 - MMJJ_RS05350 0.88 -0.4 995,204 - +0.2 995,231 + -0.2 995,315 - +1.5 995,316 + +0.6 995,317 - -0.3 995,382 + MMJJ_RS05355 0.17 +0.1 995,382 + MMJJ_RS05355 0.17 -1.1 995,387 + MMJJ_RS05355 0.17 +0.8 995,409 - MMJJ_RS05355 0.20 +0.5 995,410 + MMJJ_RS05355 0.20 +1.0 995,411 - MMJJ_RS05355 0.20 -0.3 995,411 - MMJJ_RS05355 0.20 +1.0 995,411 - MMJJ_RS05355 0.20 -0.1 995,412 + MMJJ_RS05355 0.20 +0.3 995,483 - MMJJ_RS05355 0.28 +0.5 995,523 - MMJJ_RS05355 0.33 +0.3 995,527 - MMJJ_RS05355 0.33 -0.3 995,531 - MMJJ_RS05355 0.34 -0.0 995,592 - MMJJ_RS05355 0.41 +1.1 995,612 - MMJJ_RS05355 0.43 +0.4 995,613 + MMJJ_RS05355 0.43 +0.1 995,613 + MMJJ_RS05355 0.43 -0.3 995,706 + MMJJ_RS05355 0.54 -0.2 995,729 - MMJJ_RS05355 0.56 -0.1 995,729 - MMJJ_RS05355 0.56 -0.6 995,729 - MMJJ_RS05355 0.56 -0.0 995,730 + MMJJ_RS05355 0.56 +0.9 995,731 - MMJJ_RS05355 0.56 +0.7 995,874 + MMJJ_RS05355 0.73 +0.7 995,886 + MMJJ_RS05355 0.74 +0.1 995,921 + MMJJ_RS05355 0.78 +0.5 995,930 + MMJJ_RS05355 0.79 +0.5 995,930 + MMJJ_RS05355 0.79 -1.6 996,059 + +0.2 996,070 - -0.5 996,071 + -0.1 996,124 - +0.2 996,138 + -0.5 996,146 + -0.6 996,187 - -2.4 996,190 - +0.1 996,196 - -0.6 996,196 - -0.4 996,196 - -0.9 996,196 - -0.6 996,207 - -1.0 996,208 + -1.3 996,226 + -0.3 996,226 + -0.8
Or see this region's nucleotide sequence