Experiment: formate McAA folic dropout
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04385 and MMJJ_RS04390 are separated by 3 nucleotides MMJJ_RS04390 and MMJJ_RS04395 are separated by 14 nucleotides
MMJJ_RS04385: MMJJ_RS04385 - hypothetical protein, at 818,547 to 819,491
_RS04385
MMJJ_RS04390: MMJJ_RS04390 - rhomboid family intramembrane serine protease, at 819,495 to 820,160
_RS04390
MMJJ_RS04395: MMJJ_RS04395 - hypothetical protein, at 820,175 to 821,320
_RS04395
Position (kb) 819
820
821 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 818.503 kb on - strand at 818.504 kb on + strand at 818.504 kb on + strand at 818.508 kb on + strand at 818.508 kb on + strand at 818.511 kb on + strand at 818.533 kb on + strand at 818.597 kb on + strand at 818.609 kb on - strand at 818.609 kb on - strand at 818.609 kb on - strand at 818.610 kb on + strand at 818.610 kb on + strand at 818.610 kb on + strand at 818.610 kb on + strand at 818.624 kb on - strand at 818.645 kb on - strand, within MMJJ_RS04385 at 818.692 kb on - strand, within MMJJ_RS04385 at 818.692 kb on - strand, within MMJJ_RS04385 at 818.692 kb on - strand, within MMJJ_RS04385 at 818.692 kb on - strand, within MMJJ_RS04385 at 818.692 kb on - strand, within MMJJ_RS04385 at 818.693 kb on + strand, within MMJJ_RS04385 at 818.693 kb on + strand, within MMJJ_RS04385 at 818.695 kb on - strand, within MMJJ_RS04385 at 818.695 kb on - strand, within MMJJ_RS04385 at 818.695 kb on - strand, within MMJJ_RS04385 at 818.696 kb on + strand, within MMJJ_RS04385 at 818.696 kb on + strand, within MMJJ_RS04385 at 818.696 kb on + strand, within MMJJ_RS04385 at 818.724 kb on + strand, within MMJJ_RS04385 at 818.736 kb on - strand, within MMJJ_RS04385 at 818.736 kb on - strand, within MMJJ_RS04385 at 818.736 kb on - strand, within MMJJ_RS04385 at 818.738 kb on - strand, within MMJJ_RS04385 at 818.738 kb on - strand, within MMJJ_RS04385 at 818.742 kb on - strand, within MMJJ_RS04385 at 818.754 kb on + strand, within MMJJ_RS04385 at 818.785 kb on - strand, within MMJJ_RS04385 at 818.786 kb on + strand, within MMJJ_RS04385 at 818.802 kb on - strand, within MMJJ_RS04385 at 818.833 kb on - strand, within MMJJ_RS04385 at 818.834 kb on + strand, within MMJJ_RS04385 at 818.865 kb on - strand, within MMJJ_RS04385 at 818.865 kb on - strand, within MMJJ_RS04385 at 818.866 kb on + strand, within MMJJ_RS04385 at 818.866 kb on + strand, within MMJJ_RS04385 at 818.914 kb on + strand, within MMJJ_RS04385 at 818.917 kb on + strand, within MMJJ_RS04385 at 818.920 kb on - strand, within MMJJ_RS04385 at 818.920 kb on - strand, within MMJJ_RS04385 at 818.921 kb on + strand, within MMJJ_RS04385 at 818.925 kb on + strand, within MMJJ_RS04385 at 819.005 kb on + strand, within MMJJ_RS04385 at 819.027 kb on + strand, within MMJJ_RS04385 at 819.029 kb on - strand, within MMJJ_RS04385 at 819.030 kb on + strand, within MMJJ_RS04385 at 819.075 kb on + strand, within MMJJ_RS04385 at 819.079 kb on - strand, within MMJJ_RS04385 at 819.080 kb on + strand, within MMJJ_RS04385 at 819.096 kb on + strand, within MMJJ_RS04385 at 819.106 kb on - strand, within MMJJ_RS04385 at 819.117 kb on + strand, within MMJJ_RS04385 at 819.144 kb on - strand, within MMJJ_RS04385 at 819.269 kb on + strand, within MMJJ_RS04385 at 819.299 kb on + strand, within MMJJ_RS04385 at 819.299 kb on + strand, within MMJJ_RS04385 at 819.341 kb on - strand, within MMJJ_RS04385 at 819.383 kb on - strand, within MMJJ_RS04385 at 819.405 kb on + strand at 819.433 kb on + strand at 819.434 kb on - strand at 819.434 kb on - strand at 819.435 kb on + strand at 819.501 kb on - strand at 819.501 kb on - strand at 819.505 kb on + strand at 819.515 kb on - strand at 819.516 kb on + strand at 819.516 kb on + strand at 819.520 kb on - strand at 819.521 kb on + strand at 819.521 kb on + strand at 819.524 kb on - strand at 819.524 kb on - strand at 819.524 kb on - strand at 819.525 kb on + strand at 819.615 kb on - strand, within MMJJ_RS04390 at 819.642 kb on + strand, within MMJJ_RS04390 at 819.662 kb on - strand, within MMJJ_RS04390 at 819.684 kb on + strand, within MMJJ_RS04390 at 819.686 kb on - strand, within MMJJ_RS04390 at 819.710 kb on + strand, within MMJJ_RS04390 at 819.719 kb on - strand, within MMJJ_RS04390 at 819.720 kb on + strand, within MMJJ_RS04390 at 819.720 kb on + strand, within MMJJ_RS04390 at 819.722 kb on + strand, within MMJJ_RS04390 at 819.835 kb on + strand, within MMJJ_RS04390 at 819.835 kb on + strand, within MMJJ_RS04390 at 819.843 kb on - strand, within MMJJ_RS04390 at 819.847 kb on - strand, within MMJJ_RS04390 at 819.848 kb on + strand, within MMJJ_RS04390 at 819.848 kb on + strand, within MMJJ_RS04390 at 819.855 kb on + strand, within MMJJ_RS04390 at 819.862 kb on + strand, within MMJJ_RS04390 at 819.866 kb on - strand, within MMJJ_RS04390 at 819.866 kb on - strand, within MMJJ_RS04390 at 819.866 kb on - strand, within MMJJ_RS04390 at 819.867 kb on + strand, within MMJJ_RS04390 at 819.867 kb on + strand, within MMJJ_RS04390 at 819.868 kb on - strand, within MMJJ_RS04390 at 819.869 kb on + strand, within MMJJ_RS04390 at 819.873 kb on - strand, within MMJJ_RS04390 at 819.874 kb on + strand, within MMJJ_RS04390 at 819.874 kb on + strand, within MMJJ_RS04390 at 819.878 kb on - strand, within MMJJ_RS04390 at 819.878 kb on - strand, within MMJJ_RS04390 at 819.878 kb on - strand, within MMJJ_RS04390 at 819.879 kb on + strand, within MMJJ_RS04390 at 819.879 kb on + strand, within MMJJ_RS04390 at 819.879 kb on + strand, within MMJJ_RS04390 at 819.879 kb on + strand, within MMJJ_RS04390 at 819.879 kb on + strand, within MMJJ_RS04390 at 819.880 kb on - strand, within MMJJ_RS04390 at 819.881 kb on + strand, within MMJJ_RS04390 at 819.898 kb on - strand, within MMJJ_RS04390 at 819.899 kb on + strand, within MMJJ_RS04390 at 819.899 kb on + strand, within MMJJ_RS04390 at 819.899 kb on + strand, within MMJJ_RS04390 at 819.908 kb on - strand, within MMJJ_RS04390 at 819.908 kb on - strand, within MMJJ_RS04390 at 819.910 kb on - strand, within MMJJ_RS04390 at 819.911 kb on + strand, within MMJJ_RS04390 at 819.911 kb on + strand, within MMJJ_RS04390 at 819.952 kb on + strand, within MMJJ_RS04390 at 819.952 kb on + strand, within MMJJ_RS04390 at 819.975 kb on - strand, within MMJJ_RS04390 at 819.975 kb on - strand, within MMJJ_RS04390 at 820.045 kb on - strand, within MMJJ_RS04390 at 820.049 kb on + strand, within MMJJ_RS04390 at 820.049 kb on + strand, within MMJJ_RS04390 at 820.073 kb on - strand, within MMJJ_RS04390 at 820.104 kb on - strand at 820.105 kb on + strand at 820.105 kb on + strand at 820.112 kb on - strand at 820.113 kb on + strand at 820.113 kb on + strand at 820.152 kb on - strand at 820.153 kb on + strand at 820.153 kb on + strand at 820.176 kb on - strand at 820.177 kb on + strand at 820.180 kb on - strand at 820.222 kb on + strand at 820.222 kb on + strand at 820.229 kb on - strand at 820.230 kb on + strand at 820.230 kb on + strand at 820.281 kb on - strand at 820.285 kb on + strand at 820.285 kb on + strand at 820.288 kb on - strand at 820.298 kb on - strand, within MMJJ_RS04395 at 820.298 kb on - strand, within MMJJ_RS04395 at 820.299 kb on + strand, within MMJJ_RS04395 at 820.299 kb on + strand, within MMJJ_RS04395 at 820.300 kb on - strand, within MMJJ_RS04395 at 820.300 kb on - strand, within MMJJ_RS04395 at 820.301 kb on + strand, within MMJJ_RS04395 at 820.301 kb on + strand, within MMJJ_RS04395 at 820.301 kb on + strand, within MMJJ_RS04395 at 820.301 kb on + strand, within MMJJ_RS04395 at 820.309 kb on - strand, within MMJJ_RS04395 at 820.367 kb on + strand, within MMJJ_RS04395 at 820.369 kb on + strand, within MMJJ_RS04395 at 820.425 kb on - strand, within MMJJ_RS04395 at 820.426 kb on + strand, within MMJJ_RS04395 at 820.434 kb on + strand, within MMJJ_RS04395 at 820.461 kb on + strand, within MMJJ_RS04395 at 820.472 kb on + strand, within MMJJ_RS04395 at 820.477 kb on + strand, within MMJJ_RS04395 at 820.533 kb on + strand, within MMJJ_RS04395 at 820.604 kb on - strand, within MMJJ_RS04395 at 820.644 kb on - strand, within MMJJ_RS04395 at 820.659 kb on + strand, within MMJJ_RS04395 at 820.661 kb on - strand, within MMJJ_RS04395 at 820.662 kb on + strand, within MMJJ_RS04395 at 820.710 kb on - strand, within MMJJ_RS04395 at 820.824 kb on + strand, within MMJJ_RS04395 at 820.837 kb on - strand, within MMJJ_RS04395 at 820.838 kb on + strand, within MMJJ_RS04395 at 820.850 kb on - strand, within MMJJ_RS04395 at 820.914 kb on - strand, within MMJJ_RS04395 at 820.937 kb on + strand, within MMJJ_RS04395 at 820.937 kb on + strand at 820.937 kb on + strand, within MMJJ_RS04395 at 820.969 kb on - strand, within MMJJ_RS04395 at 820.970 kb on + strand, within MMJJ_RS04395 at 821.028 kb on + strand, within MMJJ_RS04395 at 821.046 kb on + strand, within MMJJ_RS04395 at 821.048 kb on - strand, within MMJJ_RS04395 at 821.048 kb on - strand, within MMJJ_RS04395 at 821.049 kb on + strand, within MMJJ_RS04395 at 821.079 kb on + strand, within MMJJ_RS04395 at 821.103 kb on - strand, within MMJJ_RS04395 at 821.103 kb on - strand, within MMJJ_RS04395 at 821.103 kb on - strand, within MMJJ_RS04395 at 821.108 kb on + strand, within MMJJ_RS04395 at 821.108 kb on + strand, within MMJJ_RS04395 at 821.132 kb on - strand, within MMJJ_RS04395 at 821.136 kb on - strand, within MMJJ_RS04395 at 821.136 kb on - strand at 821.137 kb on + strand, within MMJJ_RS04395 at 821.142 kb on + strand, within MMJJ_RS04395
Per-strain Table
Position Strand Gene LocusTag Fraction formate McAA folic dropout remove 818,503 - +0.5 818,504 + -0.2 818,504 + -0.2 818,508 + -0.3 818,508 + +0.7 818,511 + -0.0 818,533 + -0.7 818,597 + +0.8 818,609 - +0.3 818,609 - -0.1 818,609 - +1.3 818,610 + +0.9 818,610 + -0.0 818,610 + -0.1 818,610 + -0.2 818,624 - -0.3 818,645 - MMJJ_RS04385 0.10 -0.8 818,692 - MMJJ_RS04385 0.15 +0.5 818,692 - MMJJ_RS04385 0.15 +0.7 818,692 - MMJJ_RS04385 0.15 -0.6 818,692 - MMJJ_RS04385 0.15 -0.8 818,692 - MMJJ_RS04385 0.15 -0.1 818,693 + MMJJ_RS04385 0.15 -0.4 818,693 + MMJJ_RS04385 0.15 +0.4 818,695 - MMJJ_RS04385 0.16 +1.1 818,695 - MMJJ_RS04385 0.16 -1.2 818,695 - MMJJ_RS04385 0.16 -0.1 818,696 + MMJJ_RS04385 0.16 -0.1 818,696 + MMJJ_RS04385 0.16 -1.9 818,696 + MMJJ_RS04385 0.16 -0.6 818,724 + MMJJ_RS04385 0.19 -0.5 818,736 - MMJJ_RS04385 0.20 -0.0 818,736 - MMJJ_RS04385 0.20 -0.3 818,736 - MMJJ_RS04385 0.20 +0.1 818,738 - MMJJ_RS04385 0.20 -0.4 818,738 - MMJJ_RS04385 0.20 -0.4 818,742 - MMJJ_RS04385 0.21 +0.1 818,754 + MMJJ_RS04385 0.22 +0.4 818,785 - MMJJ_RS04385 0.25 +0.3 818,786 + MMJJ_RS04385 0.25 -0.7 818,802 - MMJJ_RS04385 0.27 +0.7 818,833 - MMJJ_RS04385 0.30 -0.6 818,834 + MMJJ_RS04385 0.30 +0.6 818,865 - MMJJ_RS04385 0.34 -2.9 818,865 - MMJJ_RS04385 0.34 +0.3 818,866 + MMJJ_RS04385 0.34 -0.4 818,866 + MMJJ_RS04385 0.34 -0.2 818,914 + MMJJ_RS04385 0.39 -0.4 818,917 + MMJJ_RS04385 0.39 +0.3 818,920 - MMJJ_RS04385 0.39 +0.3 818,920 - MMJJ_RS04385 0.39 -0.6 818,921 + MMJJ_RS04385 0.40 +0.1 818,925 + MMJJ_RS04385 0.40 +0.6 819,005 + MMJJ_RS04385 0.48 -0.7 819,027 + MMJJ_RS04385 0.51 +0.5 819,029 - MMJJ_RS04385 0.51 -0.3 819,030 + MMJJ_RS04385 0.51 +0.0 819,075 + MMJJ_RS04385 0.56 +0.3 819,079 - MMJJ_RS04385 0.56 -0.2 819,080 + MMJJ_RS04385 0.56 -0.4 819,096 + MMJJ_RS04385 0.58 -0.0 819,106 - MMJJ_RS04385 0.59 +0.1 819,117 + MMJJ_RS04385 0.60 +0.3 819,144 - MMJJ_RS04385 0.63 +1.1 819,269 + MMJJ_RS04385 0.76 +0.1 819,299 + MMJJ_RS04385 0.80 +0.3 819,299 + MMJJ_RS04385 0.80 +0.2 819,341 - MMJJ_RS04385 0.84 +0.2 819,383 - MMJJ_RS04385 0.88 -0.1 819,405 + -0.6 819,433 + -2.5 819,434 - +1.2 819,434 - +0.1 819,435 + +0.1 819,501 - -0.4 819,501 - -0.0 819,505 + +0.0 819,515 - -0.3 819,516 + +0.8 819,516 + -0.0 819,520 - +0.7 819,521 + -0.7 819,521 + -0.1 819,524 - -2.1 819,524 - +0.4 819,524 - -0.0 819,525 + -0.4 819,615 - MMJJ_RS04390 0.18 -0.1 819,642 + MMJJ_RS04390 0.22 +0.9 819,662 - MMJJ_RS04390 0.25 +0.2 819,684 + MMJJ_RS04390 0.28 +0.2 819,686 - MMJJ_RS04390 0.29 +0.1 819,710 + MMJJ_RS04390 0.32 +0.6 819,719 - MMJJ_RS04390 0.34 +0.2 819,720 + MMJJ_RS04390 0.34 +0.6 819,720 + MMJJ_RS04390 0.34 +0.4 819,722 + MMJJ_RS04390 0.34 -0.0 819,835 + MMJJ_RS04390 0.51 -1.1 819,835 + MMJJ_RS04390 0.51 +0.1 819,843 - MMJJ_RS04390 0.52 +0.0 819,847 - MMJJ_RS04390 0.53 -1.6 819,848 + MMJJ_RS04390 0.53 -0.1 819,848 + MMJJ_RS04390 0.53 +0.1 819,855 + MMJJ_RS04390 0.54 +0.3 819,862 + MMJJ_RS04390 0.55 +0.1 819,866 - MMJJ_RS04390 0.56 -0.0 819,866 - MMJJ_RS04390 0.56 -0.1 819,866 - MMJJ_RS04390 0.56 -0.8 819,867 + MMJJ_RS04390 0.56 +0.1 819,867 + MMJJ_RS04390 0.56 +1.2 819,868 - MMJJ_RS04390 0.56 +0.7 819,869 + MMJJ_RS04390 0.56 -1.9 819,873 - MMJJ_RS04390 0.57 +0.6 819,874 + MMJJ_RS04390 0.57 +0.1 819,874 + MMJJ_RS04390 0.57 +0.3 819,878 - MMJJ_RS04390 0.58 -0.1 819,878 - MMJJ_RS04390 0.58 -1.2 819,878 - MMJJ_RS04390 0.58 +0.6 819,879 + MMJJ_RS04390 0.58 -0.1 819,879 + MMJJ_RS04390 0.58 +0.4 819,879 + MMJJ_RS04390 0.58 -1.5 819,879 + MMJJ_RS04390 0.58 -0.3 819,879 + MMJJ_RS04390 0.58 +0.5 819,880 - MMJJ_RS04390 0.58 +0.8 819,881 + MMJJ_RS04390 0.58 +0.9 819,898 - MMJJ_RS04390 0.61 -0.1 819,899 + MMJJ_RS04390 0.61 -0.2 819,899 + MMJJ_RS04390 0.61 +0.6 819,899 + MMJJ_RS04390 0.61 -0.3 819,908 - MMJJ_RS04390 0.62 +0.2 819,908 - MMJJ_RS04390 0.62 +0.2 819,910 - MMJJ_RS04390 0.62 +1.0 819,911 + MMJJ_RS04390 0.62 +0.2 819,911 + MMJJ_RS04390 0.62 +0.2 819,952 + MMJJ_RS04390 0.69 -1.0 819,952 + MMJJ_RS04390 0.69 +1.0 819,975 - MMJJ_RS04390 0.72 -0.6 819,975 - MMJJ_RS04390 0.72 +0.3 820,045 - MMJJ_RS04390 0.83 -0.3 820,049 + MMJJ_RS04390 0.83 +0.9 820,049 + MMJJ_RS04390 0.83 +1.1 820,073 - MMJJ_RS04390 0.87 +0.3 820,104 - +0.1 820,105 + -0.5 820,105 + +1.2 820,112 - +0.5 820,113 + -1.9 820,113 + -0.4 820,152 - -0.5 820,153 + -0.3 820,153 + -0.4 820,176 - +0.3 820,177 + +0.7 820,180 - +0.5 820,222 + +1.0 820,222 + +0.8 820,229 - +1.2 820,230 + +0.5 820,230 + +0.5 820,281 - -0.2 820,285 + +0.0 820,285 + +0.9 820,288 - +1.3 820,298 - MMJJ_RS04395 0.11 -0.9 820,298 - MMJJ_RS04395 0.11 +0.2 820,299 + MMJJ_RS04395 0.11 -0.5 820,299 + MMJJ_RS04395 0.11 -0.4 820,300 - MMJJ_RS04395 0.11 -0.5 820,300 - MMJJ_RS04395 0.11 +0.2 820,301 + MMJJ_RS04395 0.11 +0.3 820,301 + MMJJ_RS04395 0.11 -0.1 820,301 + MMJJ_RS04395 0.11 +1.1 820,301 + MMJJ_RS04395 0.11 +0.1 820,309 - MMJJ_RS04395 0.12 -0.5 820,367 + MMJJ_RS04395 0.17 +0.4 820,369 + MMJJ_RS04395 0.17 +0.7 820,425 - MMJJ_RS04395 0.22 +0.3 820,426 + MMJJ_RS04395 0.22 -0.3 820,434 + MMJJ_RS04395 0.23 +0.3 820,461 + MMJJ_RS04395 0.25 +1.4 820,472 + MMJJ_RS04395 0.26 +1.3 820,477 + MMJJ_RS04395 0.26 -0.2 820,533 + MMJJ_RS04395 0.31 -1.1 820,604 - MMJJ_RS04395 0.37 -2.0 820,644 - MMJJ_RS04395 0.41 +0.1 820,659 + MMJJ_RS04395 0.42 +0.5 820,661 - MMJJ_RS04395 0.42 -0.7 820,662 + MMJJ_RS04395 0.42 -0.2 820,710 - MMJJ_RS04395 0.47 -0.1 820,824 + MMJJ_RS04395 0.57 -2.5 820,837 - MMJJ_RS04395 0.58 +0.0 820,838 + MMJJ_RS04395 0.58 +0.5 820,850 - MMJJ_RS04395 0.59 -0.4 820,914 - MMJJ_RS04395 0.64 +0.8 820,937 + MMJJ_RS04395 0.66 -0.0 820,937 + +1.3 820,937 + MMJJ_RS04395 0.66 +0.6 820,969 - MMJJ_RS04395 0.69 -0.2 820,970 + MMJJ_RS04395 0.69 +0.9 821,028 + MMJJ_RS04395 0.74 +1.4 821,046 + MMJJ_RS04395 0.76 +1.0 821,048 - MMJJ_RS04395 0.76 +0.3 821,048 - MMJJ_RS04395 0.76 +0.2 821,049 + MMJJ_RS04395 0.76 -0.3 821,079 + MMJJ_RS04395 0.79 +0.5 821,103 - MMJJ_RS04395 0.81 +1.1 821,103 - MMJJ_RS04395 0.81 +0.7 821,103 - MMJJ_RS04395 0.81 +0.2 821,108 + MMJJ_RS04395 0.81 +0.7 821,108 + MMJJ_RS04395 0.81 -0.1 821,132 - MMJJ_RS04395 0.84 +1.2 821,136 - MMJJ_RS04395 0.84 -2.5 821,136 - +0.1 821,137 + MMJJ_RS04395 0.84 -0.0 821,142 + MMJJ_RS04395 0.84 -0.4
Or see this region's nucleotide sequence