Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03285

Experiment: formate McAA folic dropout

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03280 and MMJJ_RS03285 are separated by 4 nucleotidesMMJJ_RS03285 and MMJJ_RS03290 are separated by 5 nucleotides MMJJ_RS03280: MMJJ_RS03280 - DNA-directed DNA polymerase, at 620,276 to 622,630 _RS03280 MMJJ_RS03285: MMJJ_RS03285 - gamma-glutamylcyclotransferase, at 622,635 to 622,958 _RS03285 MMJJ_RS03290: MMJJ_RS03290 - amidohydrolase, at 622,964 to 624,244 _RS03290 Position (kb) 622 623Strain fitness (log2 ratio) -2 -1 0 1at 621.686 kb on + strand, within MMJJ_RS03280at 621.881 kb on - strand, within MMJJ_RS03280at 621.883 kb on - strand, within MMJJ_RS03280at 621.895 kb on - strand, within MMJJ_RS03280at 621.923 kb on + strand, within MMJJ_RS03280at 622.031 kb on + strand, within MMJJ_RS03280at 622.036 kb on - strand, within MMJJ_RS03280at 622.036 kb on - strand, within MMJJ_RS03280at 622.037 kb on + strand, within MMJJ_RS03280at 622.037 kb on + strand, within MMJJ_RS03280at 622.037 kb on + strand, within MMJJ_RS03280at 622.037 kb on + strand, within MMJJ_RS03280at 622.037 kb on + strand, within MMJJ_RS03280at 622.039 kb on - strand, within MMJJ_RS03280at 622.098 kb on - strand, within MMJJ_RS03280at 622.112 kb on - strand, within MMJJ_RS03280at 622.121 kb on + strand, within MMJJ_RS03280at 622.146 kb on - strand, within MMJJ_RS03280at 622.196 kb on + strand, within MMJJ_RS03280at 622.235 kb on + strand, within MMJJ_RS03280at 622.268 kb on + strand, within MMJJ_RS03280at 622.321 kb on - strand, within MMJJ_RS03280at 622.349 kb on - strand, within MMJJ_RS03280at 622.350 kb on + strand, within MMJJ_RS03280at 622.351 kb on - strand, within MMJJ_RS03280at 622.352 kb on + strand, within MMJJ_RS03280at 622.433 kb on - strandat 622.433 kb on - strandat 622.433 kb on - strandat 622.433 kb on - strandat 622.433 kb on - strandat 622.434 kb on + strandat 622.434 kb on + strandat 622.441 kb on + strandat 622.512 kb on + strandat 622.512 kb on + strandat 622.514 kb on - strandat 622.514 kb on - strandat 622.515 kb on + strandat 622.544 kb on + strandat 622.545 kb on - strandat 622.571 kb on + strandat 622.604 kb on - strandat 622.697 kb on + strand, within MMJJ_RS03285at 622.697 kb on + strand, within MMJJ_RS03285at 622.733 kb on + strand, within MMJJ_RS03285at 622.737 kb on + strand, within MMJJ_RS03285at 622.878 kb on - strand, within MMJJ_RS03285at 622.878 kb on - strand, within MMJJ_RS03285at 622.878 kb on - strand, within MMJJ_RS03285at 622.879 kb on + strand, within MMJJ_RS03285at 622.879 kb on + strand, within MMJJ_RS03285at 622.879 kb on + strand, within MMJJ_RS03285at 622.879 kb on + strand, within MMJJ_RS03285at 622.879 kb on + strand, within MMJJ_RS03285at 622.879 kb on + strand, within MMJJ_RS03285at 622.913 kb on + strand, within MMJJ_RS03285at 622.913 kb on + strand, within MMJJ_RS03285at 622.927 kb on + strandat 622.935 kb on - strandat 622.945 kb on - strandat 622.946 kb on + strandat 622.968 kb on - strandat 622.995 kb on - strandat 622.995 kb on - strandat 622.999 kb on - strandat 622.999 kb on - strandat 623.000 kb on + strandat 623.000 kb on + strandat 623.002 kb on - strandat 623.002 kb on - strandat 623.007 kb on - strandat 623.008 kb on + strandat 623.035 kb on + strandat 623.064 kb on - strandat 623.065 kb on + strandat 623.159 kb on - strand, within MMJJ_RS03290at 623.160 kb on + strand, within MMJJ_RS03290at 623.282 kb on - strandat 623.348 kb on - strand, within MMJJ_RS03290at 623.377 kb on - strand, within MMJJ_RS03290at 623.377 kb on - strand, within MMJJ_RS03290at 623.406 kb on - strand, within MMJJ_RS03290at 623.411 kb on - strand, within MMJJ_RS03290at 623.422 kb on + strand, within MMJJ_RS03290at 623.449 kb on - strand, within MMJJ_RS03290at 623.450 kb on + strand, within MMJJ_RS03290at 623.451 kb on - strand, within MMJJ_RS03290at 623.452 kb on + strand, within MMJJ_RS03290at 623.452 kb on + strand, within MMJJ_RS03290at 623.452 kb on + strand, within MMJJ_RS03290at 623.452 kb on + strand, within MMJJ_RS03290at 623.456 kb on + strand, within MMJJ_RS03290at 623.456 kb on + strand, within MMJJ_RS03290at 623.463 kb on - strand, within MMJJ_RS03290at 623.511 kb on - strand, within MMJJ_RS03290at 623.518 kb on + strand, within MMJJ_RS03290at 623.541 kb on + strand, within MMJJ_RS03290at 623.591 kb on - strand, within MMJJ_RS03290at 623.592 kb on + strand, within MMJJ_RS03290at 623.592 kb on + strand, within MMJJ_RS03290at 623.598 kb on - strand, within MMJJ_RS03290at 623.598 kb on - strand, within MMJJ_RS03290at 623.598 kb on - strand, within MMJJ_RS03290at 623.599 kb on + strand, within MMJJ_RS03290at 623.599 kb on + strand, within MMJJ_RS03290at 623.599 kb on + strand, within MMJJ_RS03290at 623.599 kb on + strand, within MMJJ_RS03290at 623.602 kb on - strand, within MMJJ_RS03290at 623.603 kb on + strand, within MMJJ_RS03290at 623.603 kb on + strand, within MMJJ_RS03290at 623.637 kb on - strand, within MMJJ_RS03290at 623.638 kb on + strand, within MMJJ_RS03290at 623.673 kb on - strand, within MMJJ_RS03290at 623.678 kb on - strand, within MMJJ_RS03290at 623.679 kb on + strand, within MMJJ_RS03290at 623.679 kb on + strand, within MMJJ_RS03290at 623.679 kb on + strand, within MMJJ_RS03290at 623.826 kb on - strand, within MMJJ_RS03290at 623.826 kb on - strand, within MMJJ_RS03290at 623.827 kb on + strand, within MMJJ_RS03290at 623.827 kb on + strand, within MMJJ_RS03290at 623.852 kb on - strand, within MMJJ_RS03290at 623.899 kb on - strand, within MMJJ_RS03290at 623.899 kb on - strand, within MMJJ_RS03290at 623.909 kb on + strand, within MMJJ_RS03290at 623.914 kb on - strand, within MMJJ_RS03290at 623.940 kb on - strand, within MMJJ_RS03290at 623.940 kb on - strand, within MMJJ_RS03290at 623.944 kb on - strand, within MMJJ_RS03290at 623.945 kb on + strand, within MMJJ_RS03290

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Per-strain Table

Position Strand Gene LocusTag Fraction formate McAA folic dropout
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621,686 + MMJJ_RS03280 0.60 -0.4
621,881 - MMJJ_RS03280 0.68 -0.1
621,883 - MMJJ_RS03280 0.68 +0.1
621,895 - MMJJ_RS03280 0.69 +0.3
621,923 + MMJJ_RS03280 0.70 -1.2
622,031 + MMJJ_RS03280 0.75 +0.6
622,036 - MMJJ_RS03280 0.75 +0.2
622,036 - MMJJ_RS03280 0.75 -0.4
622,037 + MMJJ_RS03280 0.75 -0.2
622,037 + MMJJ_RS03280 0.75 -2.1
622,037 + MMJJ_RS03280 0.75 -0.1
622,037 + MMJJ_RS03280 0.75 +0.5
622,037 + MMJJ_RS03280 0.75 -1.0
622,039 - MMJJ_RS03280 0.75 +0.1
622,098 - MMJJ_RS03280 0.77 -0.7
622,112 - MMJJ_RS03280 0.78 +0.5
622,121 + MMJJ_RS03280 0.78 -0.9
622,146 - MMJJ_RS03280 0.79 -2.0
622,196 + MMJJ_RS03280 0.82 +0.9
622,235 + MMJJ_RS03280 0.83 +0.8
622,268 + MMJJ_RS03280 0.85 -0.3
622,321 - MMJJ_RS03280 0.87 -0.6
622,349 - MMJJ_RS03280 0.88 -0.5
622,350 + MMJJ_RS03280 0.88 +0.1
622,351 - MMJJ_RS03280 0.88 -0.8
622,352 + MMJJ_RS03280 0.88 +0.6
622,433 - -0.8
622,433 - -0.1
622,433 - +0.5
622,433 - -0.9
622,433 - -0.2
622,434 + +0.1
622,434 + -0.1
622,441 + -0.5
622,512 + +0.2
622,512 + -0.0
622,514 - +0.6
622,514 - +0.3
622,515 + -0.4
622,544 + -0.5
622,545 - +0.2
622,571 + +0.0
622,604 - +0.8
622,697 + MMJJ_RS03285 0.19 -0.1
622,697 + MMJJ_RS03285 0.19 +0.4
622,733 + MMJJ_RS03285 0.30 +0.0
622,737 + MMJJ_RS03285 0.31 -1.5
622,878 - MMJJ_RS03285 0.75 +1.0
622,878 - MMJJ_RS03285 0.75 +0.5
622,878 - MMJJ_RS03285 0.75 +0.6
622,879 + MMJJ_RS03285 0.75 +0.8
622,879 + MMJJ_RS03285 0.75 +0.8
622,879 + MMJJ_RS03285 0.75 +0.6
622,879 + MMJJ_RS03285 0.75 -0.0
622,879 + MMJJ_RS03285 0.75 -0.2
622,879 + MMJJ_RS03285 0.75 +0.3
622,913 + MMJJ_RS03285 0.86 -0.8
622,913 + MMJJ_RS03285 0.86 -1.8
622,927 + +0.0
622,935 - -0.7
622,945 - +0.8
622,946 + -0.5
622,968 - -0.8
622,995 - +1.0
622,995 - +0.1
622,999 - +1.6
622,999 - +0.7
623,000 + -0.1
623,000 + -0.2
623,002 - -0.4
623,002 - -0.3
623,007 - -2.5
623,008 + -0.8
623,035 + +1.6
623,064 - +0.3
623,065 + +0.2
623,159 - MMJJ_RS03290 0.15 -0.4
623,160 + MMJJ_RS03290 0.15 +1.1
623,282 - +0.4
623,348 - MMJJ_RS03290 0.30 +0.7
623,377 - MMJJ_RS03290 0.32 +0.5
623,377 - MMJJ_RS03290 0.32 -0.3
623,406 - MMJJ_RS03290 0.35 +0.3
623,411 - MMJJ_RS03290 0.35 -1.2
623,422 + MMJJ_RS03290 0.36 +0.0
623,449 - MMJJ_RS03290 0.38 +0.4
623,450 + MMJJ_RS03290 0.38 +0.5
623,451 - MMJJ_RS03290 0.38 +0.0
623,452 + MMJJ_RS03290 0.38 +0.1
623,452 + MMJJ_RS03290 0.38 -0.2
623,452 + MMJJ_RS03290 0.38 -0.2
623,452 + MMJJ_RS03290 0.38 -0.2
623,456 + MMJJ_RS03290 0.38 +0.4
623,456 + MMJJ_RS03290 0.38 +0.6
623,463 - MMJJ_RS03290 0.39 +0.1
623,511 - MMJJ_RS03290 0.43 +0.7
623,518 + MMJJ_RS03290 0.43 +0.2
623,541 + MMJJ_RS03290 0.45 +0.8
623,591 - MMJJ_RS03290 0.49 +0.3
623,592 + MMJJ_RS03290 0.49 +1.0
623,592 + MMJJ_RS03290 0.49 -0.3
623,598 - MMJJ_RS03290 0.49 +0.2
623,598 - MMJJ_RS03290 0.49 +0.3
623,598 - MMJJ_RS03290 0.49 +0.6
623,599 + MMJJ_RS03290 0.50 +1.6
623,599 + MMJJ_RS03290 0.50 +1.3
623,599 + MMJJ_RS03290 0.50 +1.1
623,599 + MMJJ_RS03290 0.50 +1.0
623,602 - MMJJ_RS03290 0.50 +0.8
623,603 + MMJJ_RS03290 0.50 -0.1
623,603 + MMJJ_RS03290 0.50 -0.3
623,637 - MMJJ_RS03290 0.53 +1.0
623,638 + MMJJ_RS03290 0.53 -0.9
623,673 - MMJJ_RS03290 0.55 -0.8
623,678 - MMJJ_RS03290 0.56 +0.8
623,679 + MMJJ_RS03290 0.56 -0.2
623,679 + MMJJ_RS03290 0.56 +1.1
623,679 + MMJJ_RS03290 0.56 +0.3
623,826 - MMJJ_RS03290 0.67 -0.1
623,826 - MMJJ_RS03290 0.67 -0.0
623,827 + MMJJ_RS03290 0.67 -0.4
623,827 + MMJJ_RS03290 0.67 -0.0
623,852 - MMJJ_RS03290 0.69 +0.5
623,899 - MMJJ_RS03290 0.73 -0.4
623,899 - MMJJ_RS03290 0.73 -0.0
623,909 + MMJJ_RS03290 0.74 -0.4
623,914 - MMJJ_RS03290 0.74 +0.7
623,940 - MMJJ_RS03290 0.76 +0.9
623,940 - MMJJ_RS03290 0.76 -0.9
623,944 - MMJJ_RS03290 0.77 -0.1
623,945 + MMJJ_RS03290 0.77 -0.1

Or see this region's nucleotide sequence