Experiment: formate McAA folic dropout
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02335 and MMJJ_RS02340 are separated by 266 nucleotides MMJJ_RS02340 and MMJJ_RS02345 are separated by 349 nucleotides
MMJJ_RS02335: MMJJ_RS02335 - ABC transporter substrate-binding protein, at 441,052 to 442,323
_RS02335
MMJJ_RS02340: MMJJ_RS02340 - SAM-dependent methyltransferase, at 442,590 to 443,138
_RS02340
MMJJ_RS02345: MMJJ_RS02345 - ATP-binding protein, at 443,488 to 444,759
_RS02345
Position (kb) 442
443
444 Strain fitness (log2 ratio) -2
-1
0
1 at 441.611 kb on - strand, within MMJJ_RS02335 at 441.616 kb on - strand, within MMJJ_RS02335 at 441.621 kb on - strand, within MMJJ_RS02335 at 441.656 kb on - strand, within MMJJ_RS02335 at 441.656 kb on - strand, within MMJJ_RS02335 at 441.690 kb on - strand, within MMJJ_RS02335 at 441.713 kb on - strand, within MMJJ_RS02335 at 441.713 kb on - strand at 441.714 kb on + strand, within MMJJ_RS02335 at 441.714 kb on + strand, within MMJJ_RS02335 at 441.714 kb on + strand, within MMJJ_RS02335 at 441.714 kb on + strand, within MMJJ_RS02335 at 441.719 kb on - strand, within MMJJ_RS02335 at 441.731 kb on + strand, within MMJJ_RS02335 at 441.732 kb on - strand, within MMJJ_RS02335 at 441.736 kb on - strand, within MMJJ_RS02335 at 441.736 kb on - strand, within MMJJ_RS02335 at 441.737 kb on + strand, within MMJJ_RS02335 at 441.737 kb on + strand, within MMJJ_RS02335 at 441.751 kb on - strand, within MMJJ_RS02335 at 441.751 kb on - strand, within MMJJ_RS02335 at 441.847 kb on + strand, within MMJJ_RS02335 at 441.860 kb on - strand, within MMJJ_RS02335 at 441.860 kb on - strand, within MMJJ_RS02335 at 441.877 kb on + strand, within MMJJ_RS02335 at 441.889 kb on - strand, within MMJJ_RS02335 at 441.902 kb on - strand, within MMJJ_RS02335 at 441.902 kb on - strand, within MMJJ_RS02335 at 441.902 kb on - strand, within MMJJ_RS02335 at 441.903 kb on + strand, within MMJJ_RS02335 at 441.903 kb on + strand, within MMJJ_RS02335 at 441.903 kb on + strand, within MMJJ_RS02335 at 441.904 kb on - strand, within MMJJ_RS02335 at 441.904 kb on - strand, within MMJJ_RS02335 at 441.904 kb on - strand, within MMJJ_RS02335 at 441.904 kb on - strand, within MMJJ_RS02335 at 441.904 kb on - strand, within MMJJ_RS02335 at 441.905 kb on + strand, within MMJJ_RS02335 at 441.905 kb on + strand, within MMJJ_RS02335 at 441.905 kb on + strand, within MMJJ_RS02335 at 441.905 kb on + strand, within MMJJ_RS02335 at 441.905 kb on + strand, within MMJJ_RS02335 at 441.905 kb on + strand, within MMJJ_RS02335 at 441.905 kb on + strand, within MMJJ_RS02335 at 441.905 kb on + strand, within MMJJ_RS02335 at 441.905 kb on + strand, within MMJJ_RS02335 at 441.910 kb on + strand, within MMJJ_RS02335 at 441.910 kb on + strand, within MMJJ_RS02335 at 441.917 kb on - strand, within MMJJ_RS02335 at 441.933 kb on + strand, within MMJJ_RS02335 at 441.937 kb on - strand, within MMJJ_RS02335 at 441.937 kb on - strand, within MMJJ_RS02335 at 441.938 kb on + strand, within MMJJ_RS02335 at 441.938 kb on + strand, within MMJJ_RS02335 at 441.940 kb on - strand, within MMJJ_RS02335 at 441.941 kb on + strand, within MMJJ_RS02335 at 441.961 kb on - strand, within MMJJ_RS02335 at 441.961 kb on - strand, within MMJJ_RS02335 at 441.961 kb on - strand, within MMJJ_RS02335 at 441.961 kb on - strand, within MMJJ_RS02335 at 441.962 kb on + strand, within MMJJ_RS02335 at 441.962 kb on + strand, within MMJJ_RS02335 at 441.963 kb on - strand, within MMJJ_RS02335 at 441.964 kb on + strand, within MMJJ_RS02335 at 441.964 kb on + strand, within MMJJ_RS02335 at 441.999 kb on - strand, within MMJJ_RS02335 at 442.006 kb on + strand, within MMJJ_RS02335 at 442.033 kb on + strand, within MMJJ_RS02335 at 442.036 kb on + strand, within MMJJ_RS02335 at 442.083 kb on - strand, within MMJJ_RS02335 at 442.084 kb on + strand, within MMJJ_RS02335 at 442.084 kb on + strand, within MMJJ_RS02335 at 442.087 kb on - strand, within MMJJ_RS02335 at 442.087 kb on - strand, within MMJJ_RS02335 at 442.088 kb on + strand, within MMJJ_RS02335 at 442.090 kb on + strand, within MMJJ_RS02335 at 442.113 kb on + strand, within MMJJ_RS02335 at 442.120 kb on + strand, within MMJJ_RS02335 at 442.131 kb on + strand, within MMJJ_RS02335 at 442.184 kb on - strand, within MMJJ_RS02335 at 442.186 kb on - strand, within MMJJ_RS02335 at 442.186 kb on - strand, within MMJJ_RS02335 at 442.204 kb on - strand at 442.205 kb on + strand at 442.205 kb on + strand at 442.211 kb on - strand at 442.212 kb on + strand at 442.237 kb on - strand at 442.237 kb on - strand at 442.237 kb on - strand at 442.237 kb on - strand at 442.275 kb on + strand at 442.293 kb on - strand at 442.293 kb on - strand at 442.293 kb on - strand at 442.293 kb on - strand at 442.294 kb on + strand at 442.294 kb on + strand at 442.294 kb on + strand at 442.294 kb on + strand at 442.298 kb on - strand at 442.299 kb on + strand at 442.303 kb on - strand at 442.303 kb on - strand at 442.304 kb on + strand at 442.304 kb on + strand at 442.304 kb on + strand at 442.322 kb on + strand at 442.334 kb on + strand at 442.337 kb on + strand at 442.337 kb on + strand at 442.339 kb on + strand at 442.348 kb on - strand at 442.349 kb on + strand at 442.368 kb on + strand at 442.373 kb on - strand at 442.418 kb on - strand at 442.418 kb on - strand at 442.419 kb on + strand at 442.419 kb on + strand at 442.423 kb on + strand at 442.470 kb on + strand at 442.478 kb on - strand at 442.479 kb on + strand at 442.479 kb on + strand at 442.532 kb on + strand at 442.536 kb on + strand at 442.536 kb on + strand at 442.546 kb on + strand at 442.592 kb on + strand at 442.614 kb on - strand at 442.619 kb on - strand at 442.620 kb on + strand at 442.670 kb on + strand, within MMJJ_RS02340 at 442.670 kb on + strand, within MMJJ_RS02340 at 442.740 kb on - strand, within MMJJ_RS02340 at 442.740 kb on - strand, within MMJJ_RS02340 at 442.740 kb on - strand, within MMJJ_RS02340 at 442.740 kb on - strand at 442.740 kb on - strand, within MMJJ_RS02340 at 442.741 kb on + strand, within MMJJ_RS02340 at 442.741 kb on + strand, within MMJJ_RS02340 at 442.741 kb on + strand, within MMJJ_RS02340 at 442.741 kb on + strand, within MMJJ_RS02340 at 442.741 kb on + strand, within MMJJ_RS02340 at 442.741 kb on + strand, within MMJJ_RS02340 at 442.741 kb on + strand, within MMJJ_RS02340 at 442.741 kb on + strand, within MMJJ_RS02340 at 442.765 kb on + strand, within MMJJ_RS02340 at 442.765 kb on + strand, within MMJJ_RS02340 at 442.906 kb on - strand, within MMJJ_RS02340 at 442.906 kb on - strand, within MMJJ_RS02340 at 442.906 kb on - strand, within MMJJ_RS02340 at 442.907 kb on + strand, within MMJJ_RS02340 at 443.078 kb on - strand, within MMJJ_RS02340 at 443.079 kb on + strand, within MMJJ_RS02340 at 443.082 kb on + strand, within MMJJ_RS02340 at 443.082 kb on + strand, within MMJJ_RS02340 at 443.214 kb on + strand at 443.218 kb on - strand at 443.236 kb on - strand at 443.236 kb on - strand at 443.237 kb on + strand at 443.238 kb on - strand at 443.238 kb on - strand at 443.239 kb on + strand at 443.240 kb on - strand at 443.240 kb on - strand at 443.288 kb on + strand at 443.301 kb on + strand at 443.337 kb on - strand at 443.350 kb on - strand at 443.354 kb on - strand at 443.355 kb on + strand at 443.384 kb on - strand at 443.384 kb on - strand at 443.394 kb on + strand at 443.398 kb on - strand at 443.402 kb on - strand at 443.463 kb on - strand at 443.463 kb on - strand at 443.463 kb on - strand at 443.463 kb on - strand at 443.463 kb on - strand at 443.464 kb on + strand at 443.464 kb on + strand at 443.464 kb on + strand at 443.464 kb on + strand at 443.464 kb on + strand at 443.464 kb on + strand at 443.465 kb on - strand at 443.465 kb on - strand at 443.465 kb on - strand at 443.465 kb on - strand at 443.466 kb on + strand at 443.466 kb on + strand at 443.467 kb on - strand at 443.467 kb on - strand at 443.468 kb on + strand at 443.468 kb on + strand at 443.468 kb on + strand at 443.472 kb on + strand at 443.490 kb on + strand at 443.494 kb on + strand at 443.537 kb on + strand at 443.538 kb on - strand at 443.539 kb on + strand at 443.564 kb on + strand at 443.583 kb on + strand at 443.584 kb on - strand at 443.585 kb on + strand at 443.742 kb on + strand, within MMJJ_RS02345 at 443.807 kb on - strand, within MMJJ_RS02345 at 443.807 kb on - strand, within MMJJ_RS02345 at 443.808 kb on + strand, within MMJJ_RS02345 at 444.001 kb on + strand, within MMJJ_RS02345 at 444.001 kb on + strand, within MMJJ_RS02345 at 444.007 kb on + strand, within MMJJ_RS02345 at 444.030 kb on - strand, within MMJJ_RS02345 at 444.059 kb on + strand, within MMJJ_RS02345 at 444.059 kb on + strand, within MMJJ_RS02345 at 444.073 kb on - strand, within MMJJ_RS02345 at 444.104 kb on - strand, within MMJJ_RS02345 at 444.105 kb on + strand, within MMJJ_RS02345 at 444.123 kb on - strand, within MMJJ_RS02345 at 444.125 kb on - strand, within MMJJ_RS02345 at 444.126 kb on + strand, within MMJJ_RS02345 at 444.135 kb on - strand, within MMJJ_RS02345
Per-strain Table
Position Strand Gene LocusTag Fraction formate McAA folic dropout remove 441,611 - MMJJ_RS02335 0.44 -1.0 441,616 - MMJJ_RS02335 0.44 -0.0 441,621 - MMJJ_RS02335 0.45 -1.0 441,656 - MMJJ_RS02335 0.47 +0.2 441,656 - MMJJ_RS02335 0.47 -0.0 441,690 - MMJJ_RS02335 0.50 +0.2 441,713 - MMJJ_RS02335 0.52 +0.5 441,713 - -1.5 441,714 + MMJJ_RS02335 0.52 -0.2 441,714 + MMJJ_RS02335 0.52 +0.9 441,714 + MMJJ_RS02335 0.52 +0.8 441,714 + MMJJ_RS02335 0.52 -0.3 441,719 - MMJJ_RS02335 0.52 +0.5 441,731 + MMJJ_RS02335 0.53 +1.0 441,732 - MMJJ_RS02335 0.53 -1.4 441,736 - MMJJ_RS02335 0.54 +0.1 441,736 - MMJJ_RS02335 0.54 -0.2 441,737 + MMJJ_RS02335 0.54 +0.9 441,737 + MMJJ_RS02335 0.54 +0.0 441,751 - MMJJ_RS02335 0.55 +0.1 441,751 - MMJJ_RS02335 0.55 +0.2 441,847 + MMJJ_RS02335 0.62 -0.5 441,860 - MMJJ_RS02335 0.64 +0.4 441,860 - MMJJ_RS02335 0.64 +1.4 441,877 + MMJJ_RS02335 0.65 +0.2 441,889 - MMJJ_RS02335 0.66 +0.8 441,902 - MMJJ_RS02335 0.67 -0.6 441,902 - MMJJ_RS02335 0.67 +0.2 441,902 - MMJJ_RS02335 0.67 -0.1 441,903 + MMJJ_RS02335 0.67 +0.8 441,903 + MMJJ_RS02335 0.67 +0.3 441,903 + MMJJ_RS02335 0.67 +1.4 441,904 - MMJJ_RS02335 0.67 -0.0 441,904 - MMJJ_RS02335 0.67 +1.0 441,904 - MMJJ_RS02335 0.67 -0.4 441,904 - MMJJ_RS02335 0.67 +0.5 441,904 - MMJJ_RS02335 0.67 +0.4 441,905 + MMJJ_RS02335 0.67 +0.7 441,905 + MMJJ_RS02335 0.67 +0.4 441,905 + MMJJ_RS02335 0.67 -0.6 441,905 + MMJJ_RS02335 0.67 +0.1 441,905 + MMJJ_RS02335 0.67 -0.2 441,905 + MMJJ_RS02335 0.67 +0.2 441,905 + MMJJ_RS02335 0.67 -2.4 441,905 + MMJJ_RS02335 0.67 -1.0 441,905 + MMJJ_RS02335 0.67 +0.1 441,910 + MMJJ_RS02335 0.67 -0.2 441,910 + MMJJ_RS02335 0.67 -1.3 441,917 - MMJJ_RS02335 0.68 +0.4 441,933 + MMJJ_RS02335 0.69 -1.0 441,937 - MMJJ_RS02335 0.70 +0.4 441,937 - MMJJ_RS02335 0.70 +0.5 441,938 + MMJJ_RS02335 0.70 +0.3 441,938 + MMJJ_RS02335 0.70 +0.6 441,940 - MMJJ_RS02335 0.70 -0.1 441,941 + MMJJ_RS02335 0.70 -0.7 441,961 - MMJJ_RS02335 0.71 +0.1 441,961 - MMJJ_RS02335 0.71 -0.2 441,961 - MMJJ_RS02335 0.71 -0.6 441,961 - MMJJ_RS02335 0.71 +0.3 441,962 + MMJJ_RS02335 0.72 -1.0 441,962 + MMJJ_RS02335 0.72 +0.2 441,963 - MMJJ_RS02335 0.72 -0.2 441,964 + MMJJ_RS02335 0.72 +0.8 441,964 + MMJJ_RS02335 0.72 +0.2 441,999 - MMJJ_RS02335 0.74 +0.5 442,006 + MMJJ_RS02335 0.75 -0.0 442,033 + MMJJ_RS02335 0.77 -1.2 442,036 + MMJJ_RS02335 0.77 +0.2 442,083 - MMJJ_RS02335 0.81 -0.3 442,084 + MMJJ_RS02335 0.81 +1.1 442,084 + MMJJ_RS02335 0.81 -0.1 442,087 - MMJJ_RS02335 0.81 -1.0 442,087 - MMJJ_RS02335 0.81 -0.0 442,088 + MMJJ_RS02335 0.81 +0.2 442,090 + MMJJ_RS02335 0.82 +0.9 442,113 + MMJJ_RS02335 0.83 +0.1 442,120 + MMJJ_RS02335 0.84 +0.2 442,131 + MMJJ_RS02335 0.85 -0.4 442,184 - MMJJ_RS02335 0.89 +0.2 442,186 - MMJJ_RS02335 0.89 -0.7 442,186 - MMJJ_RS02335 0.89 -0.2 442,204 - -0.4 442,205 + -1.2 442,205 + -0.7 442,211 - +0.9 442,212 + -0.4 442,237 - +0.3 442,237 - -1.0 442,237 - +0.3 442,237 - +0.1 442,275 + +0.8 442,293 - +0.4 442,293 - -0.7 442,293 - +0.4 442,293 - -0.3 442,294 + -0.2 442,294 + -0.3 442,294 + -0.2 442,294 + -0.7 442,298 - +0.1 442,299 + -0.0 442,303 - -0.5 442,303 - +1.0 442,304 + -2.5 442,304 + -0.6 442,304 + +0.2 442,322 + -0.0 442,334 + -0.8 442,337 + +0.1 442,337 + +0.5 442,339 + -1.1 442,348 - -2.2 442,349 + +0.6 442,368 + +0.2 442,373 - -0.0 442,418 - +0.7 442,418 - +0.2 442,419 + -0.2 442,419 + +1.4 442,423 + -0.2 442,470 + +0.1 442,478 - +0.5 442,479 + -0.8 442,479 + +0.2 442,532 + -0.1 442,536 + -0.1 442,536 + -0.5 442,546 + -0.1 442,592 + +0.5 442,614 - -0.4 442,619 - -0.2 442,620 + +0.6 442,670 + MMJJ_RS02340 0.15 +1.0 442,670 + MMJJ_RS02340 0.15 +0.5 442,740 - MMJJ_RS02340 0.27 +0.5 442,740 - MMJJ_RS02340 0.27 +1.1 442,740 - MMJJ_RS02340 0.27 -0.0 442,740 - -1.5 442,740 - MMJJ_RS02340 0.27 -0.4 442,741 + MMJJ_RS02340 0.28 +0.2 442,741 + MMJJ_RS02340 0.28 +0.2 442,741 + MMJJ_RS02340 0.28 -0.2 442,741 + MMJJ_RS02340 0.28 +0.2 442,741 + MMJJ_RS02340 0.28 +0.4 442,741 + MMJJ_RS02340 0.28 -0.1 442,741 + MMJJ_RS02340 0.28 -1.5 442,741 + MMJJ_RS02340 0.28 -0.1 442,765 + MMJJ_RS02340 0.32 -0.1 442,765 + MMJJ_RS02340 0.32 +0.2 442,906 - MMJJ_RS02340 0.58 +0.3 442,906 - MMJJ_RS02340 0.58 +1.3 442,906 - MMJJ_RS02340 0.58 -0.2 442,907 + MMJJ_RS02340 0.58 -0.0 443,078 - MMJJ_RS02340 0.89 -1.0 443,079 + MMJJ_RS02340 0.89 +0.2 443,082 + MMJJ_RS02340 0.90 +0.8 443,082 + MMJJ_RS02340 0.90 -0.6 443,214 + -0.3 443,218 - -0.1 443,236 - -0.1 443,236 - -0.6 443,237 + -0.1 443,238 - +0.0 443,238 - +1.2 443,239 + -1.1 443,240 - -0.2 443,240 - +0.6 443,288 + +0.0 443,301 + +0.1 443,337 - -0.7 443,350 - -0.5 443,354 - -0.6 443,355 + -0.9 443,384 - +0.3 443,384 - -0.4 443,394 + +0.3 443,398 - -1.5 443,402 - +0.6 443,463 - +0.6 443,463 - +0.7 443,463 - -0.6 443,463 - -0.5 443,463 - -0.2 443,464 + +0.4 443,464 + +0.0 443,464 + +0.7 443,464 + +0.1 443,464 + -1.4 443,464 + -0.8 443,465 - -1.5 443,465 - +0.1 443,465 - -0.7 443,465 - +0.2 443,466 + +0.2 443,466 + +0.3 443,467 - -0.4 443,467 - -0.2 443,468 + -0.0 443,468 + -0.7 443,468 + -0.8 443,472 + +0.5 443,490 + +0.2 443,494 + -0.2 443,537 + +0.5 443,538 - -1.4 443,539 + +0.4 443,564 + -0.5 443,583 + +0.1 443,584 - +0.3 443,585 + +0.1 443,742 + MMJJ_RS02345 0.20 -0.7 443,807 - MMJJ_RS02345 0.25 +0.6 443,807 - MMJJ_RS02345 0.25 -0.4 443,808 + MMJJ_RS02345 0.25 -0.3 444,001 + MMJJ_RS02345 0.40 +0.0 444,001 + MMJJ_RS02345 0.40 +0.5 444,007 + MMJJ_RS02345 0.41 -0.3 444,030 - MMJJ_RS02345 0.43 +1.4 444,059 + MMJJ_RS02345 0.45 -1.5 444,059 + MMJJ_RS02345 0.45 +0.1 444,073 - MMJJ_RS02345 0.46 -1.6 444,104 - MMJJ_RS02345 0.48 -0.7 444,105 + MMJJ_RS02345 0.49 +0.2 444,123 - MMJJ_RS02345 0.50 +1.1 444,125 - MMJJ_RS02345 0.50 +0.6 444,126 + MMJJ_RS02345 0.50 +0.7 444,135 - MMJJ_RS02345 0.51 -0.4
Or see this region's nucleotide sequence