Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01050

Experiment: formate McAA folic dropout

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01045 and MMJJ_RS01050 are separated by 12 nucleotidesMMJJ_RS01050 and MMJJ_RS01055 are separated by 10 nucleotidesMMJJ_RS01055 and MMJJ_RS01060 are separated by 7 nucleotides MMJJ_RS01045: MMJJ_RS01045 - ABC transporter permease, at 203,792 to 205,015 _RS01045 MMJJ_RS01050: MMJJ_RS01050 - COG1361 S-layer family protein, at 205,028 to 206,287 _RS01050 MMJJ_RS01055: MMJJ_RS01055 - hypothetical protein, at 206,298 to 206,780 _RS01055 MMJJ_RS01060: MMJJ_RS01060 - ABC transporter ATP-binding protein, at 206,788 to 207,492 _RS01060 Position (kb) 205 206 207Strain fitness (log2 ratio) -3 -2 -1 0 1at 204.153 kb on + strand, within MMJJ_RS01045at 204.205 kb on - strand, within MMJJ_RS01045at 204.326 kb on - strand, within MMJJ_RS01045at 204.327 kb on + strand, within MMJJ_RS01045at 204.327 kb on + strand, within MMJJ_RS01045at 204.361 kb on + strand, within MMJJ_RS01045at 204.482 kb on - strand, within MMJJ_RS01045at 204.483 kb on + strand, within MMJJ_RS01045at 204.505 kb on - strand, within MMJJ_RS01045at 204.537 kb on + strand, within MMJJ_RS01045at 204.722 kb on - strand, within MMJJ_RS01045at 204.739 kb on + strand, within MMJJ_RS01045at 204.739 kb on + strand, within MMJJ_RS01045at 204.743 kb on + strand, within MMJJ_RS01045at 204.753 kb on + strand, within MMJJ_RS01045at 204.770 kb on - strand, within MMJJ_RS01045at 204.770 kb on - strand, within MMJJ_RS01045at 204.771 kb on + strand, within MMJJ_RS01045at 204.771 kb on + strand, within MMJJ_RS01045at 204.771 kb on + strand, within MMJJ_RS01045at 204.771 kb on + strand, within MMJJ_RS01045at 204.826 kb on + strand, within MMJJ_RS01045at 204.827 kb on - strand, within MMJJ_RS01045at 204.828 kb on + strand, within MMJJ_RS01045at 204.836 kb on - strand, within MMJJ_RS01045at 204.907 kb on - strandat 204.908 kb on + strandat 204.908 kb on + strandat 204.944 kb on + strandat 204.960 kb on + strandat 205.073 kb on - strandat 205.074 kb on + strandat 205.104 kb on + strandat 205.124 kb on - strandat 205.170 kb on - strand, within MMJJ_RS01050at 205.170 kb on - strand, within MMJJ_RS01050at 205.171 kb on + strand, within MMJJ_RS01050at 205.171 kb on + strand, within MMJJ_RS01050at 205.174 kb on - strand, within MMJJ_RS01050at 205.175 kb on + strand, within MMJJ_RS01050at 205.218 kb on + strand, within MMJJ_RS01050at 205.245 kb on - strand, within MMJJ_RS01050at 205.245 kb on - strand, within MMJJ_RS01050at 205.245 kb on - strand, within MMJJ_RS01050at 205.246 kb on + strand, within MMJJ_RS01050at 205.246 kb on + strand, within MMJJ_RS01050at 205.248 kb on - strand, within MMJJ_RS01050at 205.248 kb on - strand, within MMJJ_RS01050at 205.249 kb on + strand, within MMJJ_RS01050at 205.249 kb on + strand, within MMJJ_RS01050at 205.314 kb on - strand, within MMJJ_RS01050at 205.314 kb on - strand, within MMJJ_RS01050at 205.314 kb on - strand, within MMJJ_RS01050at 205.314 kb on - strand, within MMJJ_RS01050at 205.314 kb on - strand, within MMJJ_RS01050at 205.315 kb on + strand, within MMJJ_RS01050at 205.315 kb on + strand, within MMJJ_RS01050at 205.315 kb on + strand, within MMJJ_RS01050at 205.320 kb on - strand, within MMJJ_RS01050at 205.320 kb on - strand, within MMJJ_RS01050at 205.347 kb on + strand, within MMJJ_RS01050at 205.347 kb on + strand, within MMJJ_RS01050at 205.367 kb on - strand, within MMJJ_RS01050at 205.393 kb on - strand, within MMJJ_RS01050at 205.395 kb on - strand, within MMJJ_RS01050at 205.395 kb on - strand, within MMJJ_RS01050at 205.448 kb on + strand, within MMJJ_RS01050at 205.449 kb on - strand, within MMJJ_RS01050at 205.510 kb on - strand, within MMJJ_RS01050at 205.510 kb on - strand, within MMJJ_RS01050at 205.565 kb on - strand, within MMJJ_RS01050at 205.566 kb on + strand, within MMJJ_RS01050at 205.569 kb on - strand, within MMJJ_RS01050at 205.570 kb on + strand, within MMJJ_RS01050at 205.574 kb on + strand, within MMJJ_RS01050at 205.574 kb on + strand, within MMJJ_RS01050at 205.574 kb on + strand, within MMJJ_RS01050at 205.577 kb on - strand, within MMJJ_RS01050at 205.578 kb on + strand, within MMJJ_RS01050at 205.584 kb on - strand, within MMJJ_RS01050at 205.585 kb on + strand, within MMJJ_RS01050at 205.599 kb on + strand, within MMJJ_RS01050at 205.599 kb on + strand, within MMJJ_RS01050at 205.656 kb on - strand, within MMJJ_RS01050at 205.657 kb on + strand, within MMJJ_RS01050at 205.657 kb on + strand, within MMJJ_RS01050at 205.673 kb on + strand, within MMJJ_RS01050at 205.737 kb on + strand, within MMJJ_RS01050at 205.797 kb on + strand, within MMJJ_RS01050at 205.847 kb on - strand, within MMJJ_RS01050at 205.867 kb on + strand, within MMJJ_RS01050at 205.904 kb on - strand, within MMJJ_RS01050at 205.943 kb on - strand, within MMJJ_RS01050at 205.954 kb on - strand, within MMJJ_RS01050at 205.955 kb on + strand, within MMJJ_RS01050at 205.966 kb on - strand, within MMJJ_RS01050at 205.971 kb on + strand, within MMJJ_RS01050at 206.001 kb on + strand, within MMJJ_RS01050at 206.072 kb on - strand, within MMJJ_RS01050at 206.072 kb on - strand, within MMJJ_RS01050at 206.077 kb on + strand, within MMJJ_RS01050at 206.120 kb on + strand, within MMJJ_RS01050at 206.120 kb on + strandat 206.166 kb on + strandat 206.174 kb on + strandat 206.258 kb on + strandat 206.306 kb on - strandat 206.371 kb on - strand, within MMJJ_RS01055at 206.473 kb on - strand, within MMJJ_RS01055at 206.542 kb on + strand, within MMJJ_RS01055at 206.587 kb on + strandat 206.667 kb on - strand, within MMJJ_RS01055at 206.726 kb on + strand, within MMJJ_RS01055at 206.843 kb on + strandat 206.964 kb on - strand, within MMJJ_RS01060at 207.138 kb on - strand, within MMJJ_RS01060at 207.207 kb on - strand, within MMJJ_RS01060at 207.209 kb on - strand, within MMJJ_RS01060at 207.209 kb on - strand, within MMJJ_RS01060at 207.210 kb on + strand, within MMJJ_RS01060at 207.221 kb on + strand, within MMJJ_RS01060at 207.222 kb on - strand, within MMJJ_RS01060at 207.258 kb on - strand, within MMJJ_RS01060at 207.280 kb on + strand, within MMJJ_RS01060

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Per-strain Table

Position Strand Gene LocusTag Fraction formate McAA folic dropout
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204,153 + MMJJ_RS01045 0.29 -0.7
204,205 - MMJJ_RS01045 0.34 +0.2
204,326 - MMJJ_RS01045 0.44 -0.3
204,327 + MMJJ_RS01045 0.44 -0.1
204,327 + MMJJ_RS01045 0.44 -0.8
204,361 + MMJJ_RS01045 0.46 -1.4
204,482 - MMJJ_RS01045 0.56 +0.1
204,483 + MMJJ_RS01045 0.56 -0.2
204,505 - MMJJ_RS01045 0.58 -2.1
204,537 + MMJJ_RS01045 0.61 +0.1
204,722 - MMJJ_RS01045 0.76 +0.1
204,739 + MMJJ_RS01045 0.77 +0.7
204,739 + MMJJ_RS01045 0.77 +0.4
204,743 + MMJJ_RS01045 0.78 +0.1
204,753 + MMJJ_RS01045 0.79 +0.6
204,770 - MMJJ_RS01045 0.80 -0.3
204,770 - MMJJ_RS01045 0.80 -0.7
204,771 + MMJJ_RS01045 0.80 +0.1
204,771 + MMJJ_RS01045 0.80 -0.4
204,771 + MMJJ_RS01045 0.80 -0.5
204,771 + MMJJ_RS01045 0.80 +0.2
204,826 + MMJJ_RS01045 0.84 +0.5
204,827 - MMJJ_RS01045 0.85 -0.1
204,828 + MMJJ_RS01045 0.85 +0.1
204,836 - MMJJ_RS01045 0.85 -0.5
204,907 - +0.3
204,908 + +0.2
204,908 + +0.7
204,944 + -1.0
204,960 + +0.2
205,073 - +0.3
205,074 + -0.7
205,104 + +0.8
205,124 - -0.4
205,170 - MMJJ_RS01050 0.11 -0.5
205,170 - MMJJ_RS01050 0.11 +0.6
205,171 + MMJJ_RS01050 0.11 +0.9
205,171 + MMJJ_RS01050 0.11 +0.8
205,174 - MMJJ_RS01050 0.12 -0.2
205,175 + MMJJ_RS01050 0.12 -0.4
205,218 + MMJJ_RS01050 0.15 -0.1
205,245 - MMJJ_RS01050 0.17 -0.6
205,245 - MMJJ_RS01050 0.17 +0.0
205,245 - MMJJ_RS01050 0.17 -0.9
205,246 + MMJJ_RS01050 0.17 +0.2
205,246 + MMJJ_RS01050 0.17 -0.6
205,248 - MMJJ_RS01050 0.17 -0.0
205,248 - MMJJ_RS01050 0.17 +0.3
205,249 + MMJJ_RS01050 0.18 -1.5
205,249 + MMJJ_RS01050 0.18 -0.0
205,314 - MMJJ_RS01050 0.23 -0.5
205,314 - MMJJ_RS01050 0.23 -0.9
205,314 - MMJJ_RS01050 0.23 -0.8
205,314 - MMJJ_RS01050 0.23 +0.3
205,314 - MMJJ_RS01050 0.23 +0.3
205,315 + MMJJ_RS01050 0.23 +1.0
205,315 + MMJJ_RS01050 0.23 -0.6
205,315 + MMJJ_RS01050 0.23 +0.6
205,320 - MMJJ_RS01050 0.23 +0.8
205,320 - MMJJ_RS01050 0.23 -1.6
205,347 + MMJJ_RS01050 0.25 +0.2
205,347 + MMJJ_RS01050 0.25 +0.9
205,367 - MMJJ_RS01050 0.27 -0.0
205,393 - MMJJ_RS01050 0.29 +1.0
205,395 - MMJJ_RS01050 0.29 -0.2
205,395 - MMJJ_RS01050 0.29 -1.2
205,448 + MMJJ_RS01050 0.33 +0.2
205,449 - MMJJ_RS01050 0.33 -0.1
205,510 - MMJJ_RS01050 0.38 -1.0
205,510 - MMJJ_RS01050 0.38 +0.4
205,565 - MMJJ_RS01050 0.43 -0.4
205,566 + MMJJ_RS01050 0.43 -0.2
205,569 - MMJJ_RS01050 0.43 +0.2
205,570 + MMJJ_RS01050 0.43 -0.8
205,574 + MMJJ_RS01050 0.43 -0.3
205,574 + MMJJ_RS01050 0.43 -0.8
205,574 + MMJJ_RS01050 0.43 -2.2
205,577 - MMJJ_RS01050 0.44 +0.2
205,578 + MMJJ_RS01050 0.44 +0.4
205,584 - MMJJ_RS01050 0.44 -0.9
205,585 + MMJJ_RS01050 0.44 +0.5
205,599 + MMJJ_RS01050 0.45 +0.0
205,599 + MMJJ_RS01050 0.45 +0.7
205,656 - MMJJ_RS01050 0.50 -0.4
205,657 + MMJJ_RS01050 0.50 -0.1
205,657 + MMJJ_RS01050 0.50 +0.3
205,673 + MMJJ_RS01050 0.51 +0.3
205,737 + MMJJ_RS01050 0.56 +0.1
205,797 + MMJJ_RS01050 0.61 -0.4
205,847 - MMJJ_RS01050 0.65 +0.1
205,867 + MMJJ_RS01050 0.67 -2.1
205,904 - MMJJ_RS01050 0.70 -0.9
205,943 - MMJJ_RS01050 0.73 -0.5
205,954 - MMJJ_RS01050 0.73 +0.5
205,955 + MMJJ_RS01050 0.74 -0.8
205,966 - MMJJ_RS01050 0.74 -0.7
205,971 + MMJJ_RS01050 0.75 -0.3
206,001 + MMJJ_RS01050 0.77 +0.8
206,072 - MMJJ_RS01050 0.83 +0.3
206,072 - MMJJ_RS01050 0.83 -3.5
206,077 + MMJJ_RS01050 0.83 +0.6
206,120 + MMJJ_RS01050 0.87 +1.0
206,120 + -0.8
206,166 + +0.6
206,174 + -0.0
206,258 + +0.8
206,306 - -0.6
206,371 - MMJJ_RS01055 0.15 -0.6
206,473 - MMJJ_RS01055 0.36 +0.5
206,542 + MMJJ_RS01055 0.51 -0.2
206,587 + +1.1
206,667 - MMJJ_RS01055 0.76 +0.4
206,726 + MMJJ_RS01055 0.89 -0.2
206,843 + -2.4
206,964 - MMJJ_RS01060 0.25 +0.3
207,138 - MMJJ_RS01060 0.50 +0.3
207,207 - MMJJ_RS01060 0.59 +0.7
207,209 - MMJJ_RS01060 0.60 -0.6
207,209 - MMJJ_RS01060 0.60 -0.3
207,210 + MMJJ_RS01060 0.60 +0.3
207,221 + MMJJ_RS01060 0.61 +0.5
207,222 - MMJJ_RS01060 0.62 +1.2
207,258 - MMJJ_RS01060 0.67 -0.5
207,280 + MMJJ_RS01060 0.70 -0.6

Or see this region's nucleotide sequence