Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14775

Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS14770 and HSERO_RS14775 are separated by 39 nucleotidesHSERO_RS14775 and HSERO_RS14780 are separated by 139 nucleotides HSERO_RS14770: HSERO_RS14770 - GTP-binding protein HflX, at 3,353,753 to 3,354,877 _RS14770 HSERO_RS14775: HSERO_RS14775 - RNA-binding protein Hfq, at 3,354,917 to 3,355,156 _RS14775 HSERO_RS14780: HSERO_RS14780 - ribosome-associated GTPase EngA, at 3,355,296 to 3,356,639 _RS14780 Position (kb) 3354 3355 3356Strain fitness (log2 ratio) -1 0 1at 3354.025 kb on - strand, within HSERO_RS14770at 3354.243 kb on + strand, within HSERO_RS14770at 3354.368 kb on - strand, within HSERO_RS14770at 3354.448 kb on + strand, within HSERO_RS14770at 3354.448 kb on + strand, within HSERO_RS14770at 3354.580 kb on + strand, within HSERO_RS14770at 3354.673 kb on + strand, within HSERO_RS14770at 3354.788 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
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3,354,025 - HSERO_RS14770 0.24 +0.5
3,354,243 + HSERO_RS14770 0.44 -0.6
3,354,368 - HSERO_RS14770 0.55 -0.0
3,354,448 + HSERO_RS14770 0.62 +0.8
3,354,448 + HSERO_RS14770 0.62 -1.4
3,354,580 + HSERO_RS14770 0.74 -1.0
3,354,673 + HSERO_RS14770 0.82 -0.6
3,354,788 - -0.8

Or see this region's nucleotide sequence