Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12315

Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS12305 and HSERO_RS12310 overlap by 4 nucleotidesHSERO_RS12310 and HSERO_RS12315 overlap by 8 nucleotidesHSERO_RS12315 and HSERO_RS12320 are separated by 76 nucleotides HSERO_RS12305: HSERO_RS12305 - cytochrome O ubiquinol oxidase, at 2,793,635 to 2,794,111 _RS12305 HSERO_RS12310: HSERO_RS12310 - cytochrome O ubiquinol oxidase, at 2,794,108 to 2,794,734 _RS12310 HSERO_RS12315: HSERO_RS12315 - cytochrome O ubiquinol oxidase, at 2,794,727 to 2,796,730 _RS12315 HSERO_RS12320: HSERO_RS12320 - cytochrome O ubiquinol oxidase, at 2,796,807 to 2,797,739 _RS12320 Position (kb) 2794 2795 2796 2797Strain fitness (log2 ratio) -1 0 1at 2795.180 kb on - strand, within HSERO_RS12315

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
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2,795,180 - HSERO_RS12315 0.23 -0.7

Or see this region's nucleotide sequence