Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07035

Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS07030 and HSERO_RS07035 are separated by 169 nucleotidesHSERO_RS07035 and HSERO_RS07040 overlap by 1 nucleotidesHSERO_RS07040 and HSERO_RS07045 are separated by 73 nucleotides HSERO_RS07030: HSERO_RS07030 - ATP-dependent Clp protease ATP-binding protein, at 1,600,463 to 1,602,766 _RS07030 HSERO_RS07035: HSERO_RS07035 - peptidase M48, at 1,602,936 to 1,604,045 _RS07035 HSERO_RS07040: HSERO_RS07040 - deoxyuridine 5'-triphosphate nucleotidohydrolase, at 1,604,045 to 1,604,494 _RS07040 HSERO_RS07045: HSERO_RS07045 - phosphopantothenate synthase, at 1,604,568 to 1,605,764 _RS07045 Position (kb) 1602 1603 1604 1605Strain fitness (log2 ratio) -1 0 1at 1602.928 kb on - strandat 1603.419 kb on - strand, within HSERO_RS07035at 1603.419 kb on - strandat 1603.470 kb on + strand, within HSERO_RS07035at 1603.473 kb on - strand, within HSERO_RS07035at 1603.772 kb on + strand, within HSERO_RS07035at 1603.780 kb on - strand, within HSERO_RS07035at 1603.807 kb on + strand, within HSERO_RS07035at 1604.013 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
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1,602,928 - -0.9
1,603,419 - HSERO_RS07035 0.44 +1.1
1,603,419 - -0.6
1,603,470 + HSERO_RS07035 0.48 +0.7
1,603,473 - HSERO_RS07035 0.48 -0.6
1,603,772 + HSERO_RS07035 0.75 -0.9
1,603,780 - HSERO_RS07035 0.76 -0.5
1,603,807 + HSERO_RS07035 0.78 -0.5
1,604,013 + +0.1

Or see this region's nucleotide sequence