Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS06205 and HSERO_RS06210 are separated by 1 nucleotides HSERO_RS06210 and HSERO_RS06215 are separated by 32 nucleotides HSERO_RS06215 and HSERO_RS06220 are separated by 166 nucleotides
HSERO_RS06205: HSERO_RS06205 - hypothetical protein, at 1,397,334 to 1,397,636
_RS06205
HSERO_RS06210: HSERO_RS06210 - chromate transporter, at 1,397,638 to 1,399,086
_RS06210
HSERO_RS06215: HSERO_RS06215 - preprotein translocase subunit YajC, at 1,399,119 to 1,399,451
_RS06215
HSERO_RS06220: HSERO_RS06220 - preprotein translocase subunit SecD, at 1,399,618 to 1,401,522
_RS06220
Position (kb) 1397
1398
1399
1400 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1396.701 kb on - strand at 1396.738 kb on + strand at 1396.746 kb on - strand at 1396.961 kb on - strand at 1397.102 kb on + strand at 1397.133 kb on - strand at 1397.547 kb on - strand, within HSERO_RS06205 at 1397.698 kb on - strand at 1397.783 kb on + strand, within HSERO_RS06210 at 1397.798 kb on + strand, within HSERO_RS06210 at 1397.841 kb on - strand, within HSERO_RS06210 at 1397.872 kb on + strand, within HSERO_RS06210 at 1397.912 kb on + strand, within HSERO_RS06210 at 1397.947 kb on + strand, within HSERO_RS06210 at 1397.954 kb on + strand, within HSERO_RS06210 at 1397.995 kb on - strand at 1398.097 kb on + strand, within HSERO_RS06210 at 1398.250 kb on + strand at 1398.447 kb on - strand, within HSERO_RS06210 at 1398.598 kb on + strand, within HSERO_RS06210 at 1398.606 kb on - strand, within HSERO_RS06210 at 1398.606 kb on - strand, within HSERO_RS06210 at 1398.772 kb on + strand, within HSERO_RS06210 at 1398.838 kb on + strand, within HSERO_RS06210 at 1398.915 kb on + strand, within HSERO_RS06210 at 1399.081 kb on - strand at 1399.489 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 1,396,701 - -0.8 1,396,738 + -0.7 1,396,746 - -0.4 1,396,961 - -0.5 1,397,102 + -1.0 1,397,133 - -0.2 1,397,547 - HSERO_RS06205 0.70 +2.7 1,397,698 - -2.9 1,397,783 + HSERO_RS06210 0.10 -1.7 1,397,798 + HSERO_RS06210 0.11 -0.9 1,397,841 - HSERO_RS06210 0.14 -2.3 1,397,872 + HSERO_RS06210 0.16 -4.6 1,397,912 + HSERO_RS06210 0.19 -2.3 1,397,947 + HSERO_RS06210 0.21 -3.1 1,397,954 + HSERO_RS06210 0.22 -1.6 1,397,995 - +1.4 1,398,097 + HSERO_RS06210 0.32 -3.9 1,398,250 + -0.1 1,398,447 - HSERO_RS06210 0.56 -2.6 1,398,598 + HSERO_RS06210 0.66 -3.1 1,398,606 - HSERO_RS06210 0.67 -4.6 1,398,606 - HSERO_RS06210 0.67 -2.0 1,398,772 + HSERO_RS06210 0.78 -1.5 1,398,838 + HSERO_RS06210 0.83 -3.3 1,398,915 + HSERO_RS06210 0.88 -0.9 1,399,081 - -0.2 1,399,489 + +1.4
Or see this region's nucleotide sequence