Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS02710

Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS02705 and HSERO_RS02710 are separated by 28 nucleotidesHSERO_RS02710 and HSERO_RS02715 are separated by 329 nucleotides HSERO_RS02705: HSERO_RS02705 - FAD-dependent oxidoreductase, at 597,730 to 599,499 _RS02705 HSERO_RS02710: HSERO_RS02710 - Zn-dependent hydrolase, at 599,528 to 600,487 _RS02710 HSERO_RS02715: HSERO_RS02715 - IclR family transcriptional regulator, at 600,817 to 601,590 _RS02715 Position (kb) 599 600 601Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 598.626 kb on - strand, within HSERO_RS02705at 598.779 kb on - strand, within HSERO_RS02705at 598.883 kb on - strand, within HSERO_RS02705at 599.100 kb on - strand, within HSERO_RS02705at 599.172 kb on - strand, within HSERO_RS02705at 599.193 kb on - strand, within HSERO_RS02705at 599.224 kb on - strand, within HSERO_RS02705at 599.282 kb on - strand, within HSERO_RS02705at 599.595 kb on + strandat 599.618 kb on + strandat 599.818 kb on + strand, within HSERO_RS02710at 599.863 kb on + strandat 599.893 kb on + strand, within HSERO_RS02710at 599.987 kb on + strand, within HSERO_RS02710at 599.997 kb on + strand, within HSERO_RS02710at 600.002 kb on + strand, within HSERO_RS02710at 600.074 kb on + strand, within HSERO_RS02710at 600.082 kb on - strand, within HSERO_RS02710at 600.311 kb on + strand, within HSERO_RS02710at 600.319 kb on - strand, within HSERO_RS02710at 600.357 kb on - strand, within HSERO_RS02710at 600.443 kb on - strandat 600.582 kb on + strandat 600.582 kb on + strandat 600.617 kb on + strandat 600.728 kb on + strandat 600.745 kb on - strandat 601.023 kb on + strand, within HSERO_RS02715at 601.131 kb on + strand, within HSERO_RS02715at 601.232 kb on + strand, within HSERO_RS02715

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
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598,626 - HSERO_RS02705 0.51 +0.7
598,779 - HSERO_RS02705 0.59 -0.9
598,883 - HSERO_RS02705 0.65 +0.3
599,100 - HSERO_RS02705 0.77 -0.3
599,172 - HSERO_RS02705 0.81 -0.2
599,193 - HSERO_RS02705 0.83 -1.1
599,224 - HSERO_RS02705 0.84 -0.2
599,282 - HSERO_RS02705 0.88 -2.7
599,595 + -0.1
599,618 + -1.1
599,818 + HSERO_RS02710 0.30 +0.0
599,863 + +0.5
599,893 + HSERO_RS02710 0.38 +1.1
599,987 + HSERO_RS02710 0.48 +1.2
599,997 + HSERO_RS02710 0.49 -1.3
600,002 + HSERO_RS02710 0.49 -0.9
600,074 + HSERO_RS02710 0.57 +0.3
600,082 - HSERO_RS02710 0.58 -1.2
600,311 + HSERO_RS02710 0.82 -0.7
600,319 - HSERO_RS02710 0.82 -1.3
600,357 - HSERO_RS02710 0.86 +0.0
600,443 - +3.1
600,582 + -0.6
600,582 + +0.7
600,617 + +1.3
600,728 + +0.1
600,745 - +5.9
601,023 + HSERO_RS02715 0.27 -1.3
601,131 + HSERO_RS02715 0.41 +1.2
601,232 + HSERO_RS02715 0.54 -0.5

Or see this region's nucleotide sequence