Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02545 and HSERO_RS02550 are separated by 110 nucleotides HSERO_RS02550 and HSERO_RS02555 are separated by 400 nucleotides HSERO_RS02555 and HSERO_RS02560 are separated by 364 nucleotides
HSERO_RS02545: HSERO_RS02545 - membrane protein, at 559,765 to 560,391
_RS02545
HSERO_RS02550: HSERO_RS02550 - protamine P1 domain containing protein, at 560,502 to 560,711
_RS02550
HSERO_RS02555: HSERO_RS02555 - chemotaxis protein, at 561,112 to 562,680
_RS02555
HSERO_RS02560: HSERO_RS02560 - hypothetical protein, at 563,045 to 563,665
_RS02560
Position (kb) 561
562
563 Strain fitness (log2 ratio) -1
0
1
2
3 at 560.224 kb on - strand, within HSERO_RS02545 at 560.274 kb on - strand, within HSERO_RS02545 at 560.378 kb on - strand at 560.406 kb on + strand at 560.414 kb on - strand at 560.414 kb on - strand at 560.801 kb on + strand at 560.855 kb on - strand at 560.876 kb on + strand at 560.948 kb on - strand at 561.134 kb on + strand at 561.252 kb on + strand at 561.270 kb on + strand, within HSERO_RS02555 at 561.410 kb on + strand, within HSERO_RS02555 at 561.434 kb on + strand, within HSERO_RS02555 at 561.575 kb on - strand, within HSERO_RS02555 at 561.624 kb on - strand at 561.661 kb on + strand, within HSERO_RS02555 at 561.669 kb on - strand, within HSERO_RS02555 at 561.726 kb on + strand, within HSERO_RS02555 at 561.743 kb on - strand, within HSERO_RS02555 at 561.879 kb on + strand, within HSERO_RS02555 at 561.892 kb on - strand, within HSERO_RS02555 at 562.219 kb on + strand, within HSERO_RS02555 at 562.275 kb on - strand, within HSERO_RS02555 at 562.317 kb on - strand, within HSERO_RS02555 at 562.345 kb on + strand at 562.398 kb on - strand, within HSERO_RS02555 at 562.696 kb on - strand at 562.861 kb on - strand at 562.874 kb on + strand at 562.881 kb on + strand at 562.948 kb on - strand at 562.952 kb on + strand at 563.023 kb on - strand at 563.139 kb on + strand, within HSERO_RS02560 at 563.159 kb on + strand, within HSERO_RS02560 at 563.499 kb on + strand, within HSERO_RS02560 at 563.633 kb on - strand at 563.662 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 560,224 - HSERO_RS02545 0.73 +0.5 560,274 - HSERO_RS02545 0.81 -0.4 560,378 - +0.5 560,406 + -0.6 560,414 - +1.2 560,414 - +0.3 560,801 + +0.6 560,855 - -1.3 560,876 + -0.5 560,948 - +0.7 561,134 + -0.5 561,252 + +0.6 561,270 + HSERO_RS02555 0.10 -1.7 561,410 + HSERO_RS02555 0.19 +1.1 561,434 + HSERO_RS02555 0.21 +1.9 561,575 - HSERO_RS02555 0.30 -0.6 561,624 - +1.1 561,661 + HSERO_RS02555 0.35 -0.1 561,669 - HSERO_RS02555 0.36 +0.4 561,726 + HSERO_RS02555 0.39 +1.7 561,743 - HSERO_RS02555 0.40 +3.1 561,879 + HSERO_RS02555 0.49 +0.4 561,892 - HSERO_RS02555 0.50 +0.3 562,219 + HSERO_RS02555 0.71 -1.2 562,275 - HSERO_RS02555 0.74 +0.4 562,317 - HSERO_RS02555 0.77 -0.2 562,345 + +0.7 562,398 - HSERO_RS02555 0.82 -0.3 562,696 - -0.8 562,861 - -0.1 562,874 + +1.1 562,881 + -0.3 562,948 - +0.2 562,952 + +0.7 563,023 - -0.6 563,139 + HSERO_RS02560 0.15 -0.4 563,159 + HSERO_RS02560 0.18 +0.5 563,499 + HSERO_RS02560 0.73 +1.3 563,633 - +1.0 563,662 + +1.6
Or see this region's nucleotide sequence