Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02455 and HSERO_RS02460 are separated by 139 nucleotides HSERO_RS02460 and HSERO_RS02465 are separated by 41 nucleotides
HSERO_RS02455: HSERO_RS02455 - UDP pyrophosphate phosphatase, at 536,120 to 536,974
_RS02455
HSERO_RS02460: HSERO_RS02460 - UDP pyrophosphate phosphatase, at 537,114 to 537,986
_RS02460
HSERO_RS02465: HSERO_RS02465 - ATP-dependent DNA helicase RecQ, at 538,028 to 539,884
_RS02465
Position (kb) 537
538 Strain fitness (log2 ratio) -1
0
1 at 536.174 kb on + strand at 536.241 kb on + strand, within HSERO_RS02455 at 536.241 kb on + strand, within HSERO_RS02455 at 536.241 kb on + strand, within HSERO_RS02455 at 536.313 kb on + strand, within HSERO_RS02455 at 536.420 kb on + strand, within HSERO_RS02455 at 536.539 kb on - strand, within HSERO_RS02455 at 536.615 kb on + strand, within HSERO_RS02455 at 536.615 kb on + strand, within HSERO_RS02455 at 536.623 kb on - strand, within HSERO_RS02455 at 536.810 kb on + strand, within HSERO_RS02455 at 536.874 kb on - strand, within HSERO_RS02455 at 536.967 kb on - strand at 537.036 kb on - strand at 537.190 kb on - strand at 537.200 kb on - strand at 537.636 kb on - strand, within HSERO_RS02460 at 537.759 kb on + strand, within HSERO_RS02460 at 537.823 kb on - strand, within HSERO_RS02460 at 537.842 kb on + strand, within HSERO_RS02460 at 538.137 kb on - strand at 538.137 kb on - strand at 538.175 kb on - strand at 538.213 kb on + strand at 538.213 kb on + strand at 538.383 kb on + strand, within HSERO_RS02465 at 538.383 kb on + strand at 538.391 kb on - strand, within HSERO_RS02465 at 538.393 kb on + strand, within HSERO_RS02465 at 538.393 kb on + strand, within HSERO_RS02465 at 538.401 kb on - strand, within HSERO_RS02465 at 538.431 kb on + strand, within HSERO_RS02465 at 538.439 kb on - strand, within HSERO_RS02465 at 538.439 kb on - strand, within HSERO_RS02465 at 538.504 kb on - strand, within HSERO_RS02465 at 538.772 kb on - strand, within HSERO_RS02465 at 538.847 kb on + strand, within HSERO_RS02465 at 538.859 kb on + strand, within HSERO_RS02465 at 538.895 kb on - strand, within HSERO_RS02465
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 536,174 + -0.2 536,241 + HSERO_RS02455 0.14 +0.3 536,241 + HSERO_RS02455 0.14 +1.4 536,241 + HSERO_RS02455 0.14 -1.4 536,313 + HSERO_RS02455 0.23 -0.8 536,420 + HSERO_RS02455 0.35 +0.2 536,539 - HSERO_RS02455 0.49 +0.4 536,615 + HSERO_RS02455 0.58 +0.7 536,615 + HSERO_RS02455 0.58 +0.7 536,623 - HSERO_RS02455 0.59 -0.1 536,810 + HSERO_RS02455 0.81 +0.2 536,874 - HSERO_RS02455 0.88 +0.8 536,967 - -0.8 537,036 - +0.6 537,190 - -0.7 537,200 - +0.5 537,636 - HSERO_RS02460 0.60 -0.6 537,759 + HSERO_RS02460 0.74 +0.5 537,823 - HSERO_RS02460 0.81 +0.6 537,842 + HSERO_RS02460 0.83 -0.3 538,137 - -0.4 538,137 - -0.1 538,175 - +0.4 538,213 + -0.1 538,213 + +0.3 538,383 + HSERO_RS02465 0.19 +0.5 538,383 + +1.4 538,391 - HSERO_RS02465 0.20 +0.9 538,393 + HSERO_RS02465 0.20 -0.3 538,393 + HSERO_RS02465 0.20 +0.1 538,401 - HSERO_RS02465 0.20 +1.5 538,431 + HSERO_RS02465 0.22 -0.1 538,439 - HSERO_RS02465 0.22 +0.8 538,439 - HSERO_RS02465 0.22 +1.1 538,504 - HSERO_RS02465 0.26 -0.7 538,772 - HSERO_RS02465 0.40 +0.4 538,847 + HSERO_RS02465 0.44 +1.4 538,859 + HSERO_RS02465 0.45 +0.3 538,895 - HSERO_RS02465 0.47 +0.3
Or see this region's nucleotide sequence