Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02260 and HSERO_RS02265 are separated by 435 nucleotides HSERO_RS02265 and HSERO_RS02270 are separated by 211 nucleotides
HSERO_RS02260: HSERO_RS02260 - DNA polymerase I, at 493,121 to 495,883
_RS02260
HSERO_RS02265: HSERO_RS02265 - chemotaxis protein, at 496,319 to 498,010
_RS02265
HSERO_RS02270: HSERO_RS02270 - carboxymethylenebutenolidase, at 498,222 to 499,106
_RS02270
Position (kb) 496
497
498
499 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 495.691 kb on - strand at 496.020 kb on + strand at 496.162 kb on + strand at 496.237 kb on + strand at 496.303 kb on + strand at 496.424 kb on + strand at 496.485 kb on - strand at 496.540 kb on + strand, within HSERO_RS02265 at 496.590 kb on + strand, within HSERO_RS02265 at 496.627 kb on + strand, within HSERO_RS02265 at 496.637 kb on + strand, within HSERO_RS02265 at 496.643 kb on + strand, within HSERO_RS02265 at 496.665 kb on + strand, within HSERO_RS02265 at 496.744 kb on + strand, within HSERO_RS02265 at 496.786 kb on - strand, within HSERO_RS02265 at 496.943 kb on - strand, within HSERO_RS02265 at 496.970 kb on - strand, within HSERO_RS02265 at 497.006 kb on - strand, within HSERO_RS02265 at 497.014 kb on - strand, within HSERO_RS02265 at 497.198 kb on - strand, within HSERO_RS02265 at 497.376 kb on - strand, within HSERO_RS02265 at 497.526 kb on + strand, within HSERO_RS02265 at 497.551 kb on + strand, within HSERO_RS02265 at 497.782 kb on + strand, within HSERO_RS02265 at 498.004 kb on + strand at 498.110 kb on + strand at 498.200 kb on - strand at 498.220 kb on - strand at 498.364 kb on - strand, within HSERO_RS02270 at 498.376 kb on + strand, within HSERO_RS02270 at 498.591 kb on + strand, within HSERO_RS02270 at 498.599 kb on - strand, within HSERO_RS02270 at 498.605 kb on - strand, within HSERO_RS02270 at 498.664 kb on - strand, within HSERO_RS02270 at 498.813 kb on - strand, within HSERO_RS02270 at 498.912 kb on - strand, within HSERO_RS02270 at 498.939 kb on - strand, within HSERO_RS02270 at 498.941 kb on + strand, within HSERO_RS02270 at 498.952 kb on - strand, within HSERO_RS02270
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 495,691 - -2.1 496,020 + +0.9 496,162 + +1.2 496,237 + +0.6 496,303 + -0.4 496,424 + -0.4 496,485 - +0.7 496,540 + HSERO_RS02265 0.13 +0.9 496,590 + HSERO_RS02265 0.16 -0.3 496,627 + HSERO_RS02265 0.18 -0.1 496,637 + HSERO_RS02265 0.19 -0.2 496,643 + HSERO_RS02265 0.19 +0.1 496,665 + HSERO_RS02265 0.20 -1.2 496,744 + HSERO_RS02265 0.25 -0.9 496,786 - HSERO_RS02265 0.28 -0.5 496,943 - HSERO_RS02265 0.37 -0.1 496,970 - HSERO_RS02265 0.38 -1.3 497,006 - HSERO_RS02265 0.41 -0.3 497,014 - HSERO_RS02265 0.41 +1.1 497,198 - HSERO_RS02265 0.52 -2.9 497,376 - HSERO_RS02265 0.62 -0.7 497,526 + HSERO_RS02265 0.71 +1.5 497,551 + HSERO_RS02265 0.73 -1.5 497,782 + HSERO_RS02265 0.86 -0.3 498,004 + +0.5 498,110 + +0.7 498,200 - +0.1 498,220 - +1.3 498,364 - HSERO_RS02270 0.16 -0.5 498,376 + HSERO_RS02270 0.17 -0.5 498,591 + HSERO_RS02270 0.42 -1.0 498,599 - HSERO_RS02270 0.43 +0.3 498,605 - HSERO_RS02270 0.43 +0.5 498,664 - HSERO_RS02270 0.50 -0.6 498,813 - HSERO_RS02270 0.67 +0.2 498,912 - HSERO_RS02270 0.78 -0.9 498,939 - HSERO_RS02270 0.81 -0.3 498,941 + HSERO_RS02270 0.81 +0.0 498,952 - HSERO_RS02270 0.82 -0.1
Or see this region's nucleotide sequence